BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027266
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24313.3| unnamed protein product [Vitis vinifera]              123   1e-26
ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26
ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...   120   9e-26
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ...   114   6e-24
gb|ADE77588.1| unknown [Picea sitchensis]                             110   2e-22

>emb|CBI24313.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  123 bits (309), Expect = 1e-26
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = +2

Query: 2   FVKEMPMEPDAAVLGALLGGCRIHGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGR 181
           F++EMP+E D AVLGALLGGCR+HGN EVGERVA KL+ LEP++   Y++LAN+YA +GR
Sbjct: 321 FIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGR 380

Query: 182 YNDAEKVRDFMKQRSANKVPGCS 250
           + DAEKVR  MKQR  +KVPGCS
Sbjct: 381 FEDAEKVRQLMKQRKLSKVPGCS 403


>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  123 bits (309), Expect = 1e-26
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = +2

Query: 2   FVKEMPMEPDAAVLGALLGGCRIHGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGR 181
           F++EMP+E D AVLGALLGGCR+HGN EVGERVA KL+ LEP++   Y++LAN+YA +GR
Sbjct: 369 FIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGR 428

Query: 182 YNDAEKVRDFMKQRSANKVPGCS 250
           + DAEKVR  MKQR  +KVPGCS
Sbjct: 429 FEDAEKVRQLMKQRKLSKVPGCS 451


>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score =  120 bits (302), Expect = 9e-26
 Identities = 50/83 (60%), Positives = 72/83 (86%)
 Frame = +2

Query: 2   FVKEMPMEPDAAVLGALLGGCRIHGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGR 181
           F+ ++PMEPD AVLGA+L GCR+H N+EVGER+A +L++L+P++ GYY+LLANMYA  GR
Sbjct: 398 FISDIPMEPDEAVLGAILAGCRVHNNVEVGERIAKRLIRLKPEKAGYYVLLANMYAGVGR 457

Query: 182 YNDAEKVRDFMKQRSANKVPGCS 250
           +++AE VRD M++++ +KVPGCS
Sbjct: 458 FHEAEMVRDSMQEKNMSKVPGCS 480


>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314142|gb|EFH44565.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 458

 Score =  114 bits (286), Expect = 6e-24
 Identities = 48/85 (56%), Positives = 71/85 (83%)
 Frame = +2

Query: 2   FVKEMPMEPDAAVLGALLGGCRIHGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGR 181
           F+++MP+EPD AVLGA+L GC+++GN+EVGERVA KL++LEP +G YY+ LA +Y+ +GR
Sbjct: 374 FLEDMPVEPDEAVLGAVLSGCKVYGNVEVGERVARKLIQLEPRKGSYYVTLAGLYSAAGR 433

Query: 182 YNDAEKVRDFMKQRSANKVPGCSQI 256
           +++AE +R  MK++  +KVPGCS I
Sbjct: 434 FDEAESLRQLMKEKQISKVPGCSSI 458


>gb|ADE77588.1| unknown [Picea sitchensis]
          Length = 312

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/85 (58%), Positives = 65/85 (76%)
 Frame = +2

Query: 2   FVKEMPMEPDAAVLGALLGGCRIHGNIEVGERVANKLLKLEPDEGGYYMLLANMYADSGR 181
           F+++MP+EP A+V GA LG CRIH NIE+GERVA  LL L+PD  GYY+LL+N+YA +GR
Sbjct: 99  FIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGR 158

Query: 182 YNDAEKVRDFMKQRSANKVPGCSQI 256
           ++D  KVR  MK++   K PGCS I
Sbjct: 159 WDDVAKVRKMMKEKDVKKSPGCSLI 183