BLASTX nr result
ID: Coptis21_contig00027264
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00027264
(681 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|2... 101 2e-25
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 99 5e-25
emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] 99 5e-25
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420... 98 2e-24
ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|2... 94 2e-23
>ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1|
predicted protein [Populus trichocarpa]
Length = 2157
Score = 101 bits (251), Expect(2) = 2e-25
Identities = 69/147 (46%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Frame = +1
Query: 73 NPVQSTLLRHLTVL*DAYDTVLVAAPTVSGKTICVEFVMLRNHQKEPENVMCAVYVVLLK 252
NPVQ+ + TVL + D VLVAAPT SGKTIC EF +LRNHQK PE+VM AVY+ L+
Sbjct: 1336 NPVQTQVF---TVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGPESVMRAVYIAPLE 1392
Query: 253 PLLWKDTVIGRGSLGRGVGMRVVELTGETAT-------GN*FIVARERANNLFKYP*EMG 411
+ + GRG+GMRVVELTGETAT G I E+ + L +
Sbjct: 1393 AIARERYRDWERKFGRGLGMRVVELTGETATDLKLLEKGQIIISTPEKWDALSR------ 1446
Query: 412 HWKQRKHV*KGSSLGHLSQLQKISGSG 492
WKQRK+V + SL + +L I G G
Sbjct: 1447 RWKQRKYV-QQVSLFIIDELHLIGGQG 1472
Score = 40.4 bits (93), Expect(2) = 2e-25
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 2 LQPLSVTALENPAYEALYQEFQY 70
LQPL VTAL NP+YEALYQ+F++
Sbjct: 1312 LQPLPVTALRNPSYEALYQDFKH 1334
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
vinifera]
Length = 2177
Score = 99.0 bits (245), Expect(2) = 5e-25
Identities = 65/144 (45%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Frame = +1
Query: 73 NPVQSTLLRHLTVL*DAYDTVLVAAPTVSGKTICVEFVMLRNHQKEPENVMCAVYVVLLK 252
NP+Q+ + TVL + D VLVAAPT SGKTIC EF +LRNHQK E+++ AVY+ ++
Sbjct: 1359 NPIQTQVF---TVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGSESIVRAVYIAPIE 1415
Query: 253 PLLWKDTVIGRGSLGRGVGMRVVELTGETATGN*FIVARERANNLFKYP*EMG----HWK 420
L + GRG+GMRVVELTGETAT + ER + P + WK
Sbjct: 1416 ALAKERYRDWERKFGRGLGMRVVELTGETATD---LKLLERGQVIISTPEKWDALSRRWK 1472
Query: 421 QRKHV*KGSSLGHLSQLQKISGSG 492
QRKHV + SL + +L I G G
Sbjct: 1473 QRKHV-QQVSLFIIDELHLIGGQG 1495
Score = 41.6 bits (96), Expect(2) = 5e-25
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 2 LQPLSVTALENPAYEALYQEFQY 70
LQPL VTAL NP+YEALYQEF++
Sbjct: 1335 LQPLPVTALRNPSYEALYQEFKH 1357
>emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]
Length = 2144
Score = 99.0 bits (245), Expect(2) = 5e-25
Identities = 65/144 (45%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Frame = +1
Query: 73 NPVQSTLLRHLTVL*DAYDTVLVAAPTVSGKTICVEFVMLRNHQKEPENVMCAVYVVLLK 252
NP+Q+ + TVL + D VLVAAPT SGKTIC EF +LRNHQK E+++ AVY+ ++
Sbjct: 1326 NPIQTQVF---TVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGSESIVRAVYIAPIE 1382
Query: 253 PLLWKDTVIGRGSLGRGVGMRVVELTGETATGN*FIVARERANNLFKYP*EMG----HWK 420
L + GRG+GMRVVELTGETAT + ER + P + WK
Sbjct: 1383 ALAKERYRDWERKFGRGLGMRVVELTGETATD---LKLLERGQVIISTPEKWDALSRRWK 1439
Query: 421 QRKHV*KGSSLGHLSQLQKISGSG 492
QRKHV + SL + +L I G G
Sbjct: 1440 QRKHV-QQVSLFIIDELHLIGGQG 1462
Score = 41.6 bits (96), Expect(2) = 5e-25
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 2 LQPLSVTALENPAYEALYQEFQY 70
LQPL VTAL NP+YEALYQEF++
Sbjct: 1302 LQPLPVTALRNPSYEALYQEFKH 1324
>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
putative [Ricinus communis]
Length = 1809
Score = 97.8 bits (242), Expect(2) = 2e-24
Identities = 65/144 (45%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Frame = +1
Query: 73 NPVQSTLLRHLTVL*DAYDTVLVAAPTVSGKTICVEFVMLRNHQKEPENVMCAVYVVLLK 252
NPVQ+ + TVL + D VLVAAPT SGKTIC EF +LRNHQK P++V AVY+ L+
Sbjct: 992 NPVQTQVF---TVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGPDSVTRAVYIAPLE 1048
Query: 253 PLLWKDTVIGRGSLGRGVGMRVVELTGETATGN*FIVARERANNLFKYP*EMG----HWK 420
+ + GRG+GMRVVELTGETAT + E++ + P + WK
Sbjct: 1049 AIAKERYRDWERKFGRGLGMRVVELTGETATD---LKLLEKSQIIISTPEKWDALSRRWK 1105
Query: 421 QRKHV*KGSSLGHLSQLQKISGSG 492
QRK+V + SL + +L I G G
Sbjct: 1106 QRKYV-QQVSLFIIDELHLIGGQG 1128
Score = 40.4 bits (93), Expect(2) = 2e-24
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 2 LQPLSVTALENPAYEALYQEFQY 70
LQPL VTAL NP+YEALYQ+F++
Sbjct: 968 LQPLPVTALRNPSYEALYQDFKH 990
>ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1|
predicted protein [Populus trichocarpa]
Length = 2175
Score = 94.4 bits (233), Expect(2) = 2e-23
Identities = 60/125 (48%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Frame = +1
Query: 73 NPVQSTLLRHLTVL*DAYDTVLVAAPTVSGKTICVEFVMLRNHQKEPENVMCAVYVVLLK 252
NPVQ+ + TVL + D VLVAAPT SGKT C EF +LRNHQK PE VM AVY+ L+
Sbjct: 1356 NPVQTQVF---TVLYNTDDNVLVAAPTASGKTTCAEFAILRNHQKGPECVMRAVYIAPLE 1412
Query: 253 PLLWKDTVIGRGSLGRGVGMRVVELTGETATGN*FIVARERANNLFKYP*EMG----HWK 420
+ + G+G+GMRVVELTGETAT + ER + P + WK
Sbjct: 1413 VIAKERYRDWERKFGQGLGMRVVELTGETATD---LKLLERGQIIISTPEKWDALSRRWK 1469
Query: 421 QRKHV 435
QRK+V
Sbjct: 1470 QRKYV 1474
Score = 40.4 bits (93), Expect(2) = 2e-23
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 2 LQPLSVTALENPAYEALYQEFQY 70
LQPL VTAL NP+YEALYQ+F++
Sbjct: 1332 LQPLPVTALRNPSYEALYQDFKH 1354