BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027216
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    97   1e-18
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    95   5e-18
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            95   5e-18
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    95   5e-18
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    95   5e-18

>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 42/89 (47%), Positives = 63/89 (70%)
 Frame = -1

Query: 269  RRIQSWKGKFLSYVGRLQLLKLVVNNLSIFWLAAFILPKRVVDELNRMCRNFLWVGPDGG 90
            ++I SW  +FLSY GRL L+  V+ ++  FWLAAF LP++ + E++++C  FLW GPD  
Sbjct: 1074 KKIGSWTARFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWSGPDLN 1133

Query: 89   TSHALISWEDVCYPYEEGGLGI*SLAIAN 3
            +  A ++W+DVC P +EGGLG+ S+  AN
Sbjct: 1134 SHKAKVAWDDVCKPKKEGGLGLRSIKEAN 1162


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 42/88 (47%), Positives = 60/88 (68%)
 Frame = -1

Query: 266 RIQSWKGKFLSYVGRLQLLKLVVNNLSIFWLAAFILPKRVVDELNRMCRNFLWVGPDGGT 87
           RI  W  + LS+ GRLQL+  V+++L+ FW++AF LP   + E++ +C +FLW GP+  T
Sbjct: 52  RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNT 111

Query: 86  SHALISWEDVCYPYEEGGLGI*SLAIAN 3
             A ++W DVC P +EGGLGI SL  AN
Sbjct: 112 KKAKVAWSDVCTPKDEGGLGIRSLKEAN 139


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 42/88 (47%), Positives = 60/88 (68%)
 Frame = -1

Query: 266 RIQSWKGKFLSYVGRLQLLKLVVNNLSIFWLAAFILPKRVVDELNRMCRNFLWVGPDGGT 87
           RI  W  + LS+ GRLQL+  V+++L+ FW++AF LP   + E++ +C +FLW GP+  T
Sbjct: 52  RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNT 111

Query: 86  SHALISWEDVCYPYEEGGLGI*SLAIAN 3
             A ++W DVC P +EGGLGI SL  AN
Sbjct: 112 KKAKVAWSDVCTPKDEGGLGIRSLKEAN 139


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 44/89 (49%), Positives = 61/89 (68%)
 Frame = -1

Query: 269 RRIQSWKGKFLSYVGRLQLLKLVVNNLSIFWLAAFILPKRVVDELNRMCRNFLWVGPDGG 90
           RRI +W  +FLSY GRL L+  V+ ++  FWL+AF LP+  V E++++C  FLW GP+  
Sbjct: 313 RRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELS 372

Query: 89  TSHALISWEDVCYPYEEGGLGI*SLAIAN 3
           T+ A I+WE VC P  EGGLG+ S+  AN
Sbjct: 373 TNKAKIAWETVCRPKREGGLGLQSIKEAN 401


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 44/88 (50%), Positives = 59/88 (67%)
 Frame = -1

Query: 266  RIQSWKGKFLSYVGRLQLLKLVVNNLSIFWLAAFILPKRVVDELNRMCRNFLWVGPDGGT 87
            RI SWK +FLSY GRLQLL  V+++L+ FW++AF LP+  + E+ ++   FLW G D   
Sbjct: 1051 RISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNP 1110

Query: 86   SHALISWEDVCYPYEEGGLGI*SLAIAN 3
              A ++W DVC P  EGGLG+ SL  AN
Sbjct: 1111 HKAKVAWHDVCKPKSEGGLGLRSLVDAN 1138