BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027083
         (680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   217   1e-54
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   210   2e-52
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   204   1e-50
ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis th...   186   4e-45
ref|XP_002885286.1| pentatricopeptide repeat-containing protein ...   179   6e-43

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score =  217 bits (553), Expect = 1e-54
 Identities = 116/222 (52%), Positives = 157/222 (70%), Gaps = 3/222 (1%)
 Frame = +3

Query: 24  DVFVWNVMIRCLPCGEALRFFADGIACGDLVFDRLSYVYVIGACARLRTALWEGKEVHCR 203
           ++F++N +I+CLP   ++  FAD ++   LVFD  +Y++ +GACAR   +LWEG+++H R
Sbjct: 73  NLFLFNTLIKCLPPSSSILVFADWVSREALVFDDFTYIFALGACAR-SPSLWEGRQIHAR 131

Query: 204 VLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYWSQKKGVE 383
           +LK G+  +V+V TT IHFY ++ D   AR +FDEM  +R+S TWNAMI+GY SQ+  V 
Sbjct: 132 ILKQGVWSNVLVQTTAIHFYANNNDVALARLVFDEMR-KRSSVTWNAMITGYCSQRGKVV 190

Query: 384 YFAHAALKLFCGMLL--CGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRIEKRVSVP 557
            +A  AL LF  ML+  CG   V P DTTMV VLSA +++G L TG  VHG IEK V  P
Sbjct: 191 CYARDALVLFRAMLVDACG---VKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAP 247

Query: 558 -HDVYIGTCLVDMYSKCGCLKSALVVFNRMKMKNILTWTSMI 680
            +DV++GT LVDMYSKCGCL SAL +F  MK +N+LTWT+MI
Sbjct: 248 ANDVFVGTGLVDMYSKCGCLGSALCIFWGMKERNVLTWTAMI 289



 Score = 65.5 bits (158), Expect = 9e-09
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 14/229 (6%)
 Frame = +3

Query: 36  WNVMIR--CLPCGEALRFFADGI---------ACGDLVFDRLSYVYVIGACARLRTALWE 182
           WN MI   C   G+ + +  D +         ACG    D  + V V+ A ++L   L  
Sbjct: 175 WNAMITGYCSQRGKVVCYARDALVLFRAMLVDACGVKPTDT-TMVCVLSAASQLGV-LET 232

Query: 183 GKEVHCRVLKIGLG--YDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISG 356
           G  VH  + K  L    DV VGT  +  Y   G  GSA  +F  M +R    TW AMI+G
Sbjct: 233 GVGVHGYIEKTVLAPANDVFVGTGLVDMYSKCGCLGSALCIFWGMKERNV-LTWTAMITG 291

Query: 357 YWSQKKGVEYFAHAALKLFCGMLLCGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRI 536
                +G E     AL+L   M+  G   V PN  T  S+ SAC   G +  G  +   +
Sbjct: 292 LARHGRGKE-----ALELLDEMVAYG---VKPNAVTFTSLFSACCHAGLVEEGLQLFHSM 343

Query: 537 EKRVSVPHDVYIGTCLVDMYSKCGCLKSALVVFNRMKMK-NILTWTSMI 680
             +  V   +    C+VD+  + G LK A      M ++ + + W S++
Sbjct: 344 RSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPDAILWRSLL 392


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 477

 Score =  210 bits (534), Expect = 2e-52
 Identities = 113/221 (51%), Positives = 154/221 (69%), Gaps = 3/221 (1%)
 Frame = +3

Query: 24  DVFVWNVMIRCLPCGEALRFFADGIACGDLVFDRLSYVYVIGACARLRTA--LWEGKEVH 197
           D+F++N +IRC+   + +  F +  + G + FD  +Y +V+GACAR  +A  LW G+++H
Sbjct: 72  DLFLFNTLIRCVQPNDCILIFQNEFSRGLMYFDEYTYNFVLGACARSPSASTLWVGRQLH 131

Query: 198 CRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYWSQKKG 377
            R++K G   +++V TT I+FY S+ D  SAR++FDEM  RR++ TWNAMI+GY SQK+G
Sbjct: 132 ARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEM-PRRSTVTWNAMITGYSSQKEG 190

Query: 378 VEYFAHAALKLFCGMLLCGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRIEKRVSVP 557
            + +A  AL LF  ML+   + + P  TT+VSVLSA ++IG L TG C+HG  EK V  P
Sbjct: 191 NKKYALNALSLFIDMLV-DVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTP 249

Query: 558 HD-VYIGTCLVDMYSKCGCLKSALVVFNRMKMKNILTWTSM 677
            D V+IGT LVDMYSKCGCL SAL VF RM  KNILTWT+M
Sbjct: 250 EDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAM 290


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 595

 Score =  204 bits (520), Expect = 1e-50
 Identities = 110/221 (49%), Positives = 154/221 (69%), Gaps = 3/221 (1%)
 Frame = +3

Query: 24  DVFVWNVMIRCLPCGEALRFFADGIACGDLVFDRLSYVYVIGACARLRTA--LWEGKEVH 197
           D+F++N +IRC+   +++  F +  + G + FD  +Y +V+GACAR  +A  LW G+++H
Sbjct: 192 DLFLFNTLIRCVQPNDSILIFRNEFSRGLMFFDEYTYNFVLGACARSPSASTLWVGRQLH 251

Query: 198 CRVLKIGLGYDVVVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYWSQKKG 377
             ++K G+  ++VV TT ++FY S+ D  S+RK+FDEM  RR++ TWNAMI+GY S K+G
Sbjct: 252 ALIVKHGVESNIVVPTTKVYFYASNKDIISSRKVFDEM-PRRSTVTWNAMITGYSSLKEG 310

Query: 378 VEYFAHAALKLFCGMLLCGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRIEKRVSVP 557
            + +A  AL LF  ML+   + + P  TT+VSVLSA ++IG L TG C+HG  EK V  P
Sbjct: 311 NKKYALNALYLFIDMLI-DVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTP 369

Query: 558 HD-VYIGTCLVDMYSKCGCLKSALVVFNRMKMKNILTWTSM 677
            D V+IGT LVDMYSKCGCL SAL VF RM  KNI+TWT+M
Sbjct: 370 EDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNIMTWTAM 410


>ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
           gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g18970 gi|9280314|dbj|BAB01693.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis
           thaliana] gi|332642654|gb|AEE76175.1| mitochondrial
           editing factor 20 [Arabidopsis thaliana]
          Length = 472

 Score =  186 bits (472), Expect = 4e-45
 Identities = 107/223 (47%), Positives = 144/223 (64%), Gaps = 5/223 (2%)
 Frame = +3

Query: 24  DVFVWNVMIRCLPCGEALRFFADGIACGDLVF-DRLSYVYVIGACARLRT--ALWEGKEV 194
           D F++N +++C    +++R FA+  +   L++ +  ++V+V+GACAR  +  AL  G+ V
Sbjct: 74  DKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSASSSALRVGRIV 133

Query: 195 HCRVLKIGLGYDV-VVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYWSQK 371
           H  V K+G  Y+  ++GTT +HFY  +GD   ARK+FDEM +R TS TWNAMI GY S K
Sbjct: 134 HGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPER-TSVTWNAMIGGYCSHK 192

Query: 372 KGVEYFAHAALKLFCGMLLCGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRIEKRVS 551
               + A  A+ LF     CG+  V P DTTMV VLSA ++ G L  G+ VHG IEK   
Sbjct: 193 DKGNHNARKAMVLFRRFSCCGSG-VRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGF 251

Query: 552 VPH-DVYIGTCLVDMYSKCGCLKSALVVFNRMKMKNILTWTSM 677
            P  DV+IGT LVDMYSKCGCL +A  VF  MK+KN+ TWTSM
Sbjct: 252 TPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSM 294


>ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331126|gb|EFH61545.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 471

 Score =  179 bits (453), Expect = 6e-43
 Identities = 104/223 (46%), Positives = 141/223 (63%), Gaps = 5/223 (2%)
 Frame = +3

Query: 24  DVFVWNVMIRCLPCGEALRFFADGIACGDLVF-DRLSYVYVIGACARLRT--ALWEGKEV 194
           D F++N +++C    +++R F +  +   L++ +  ++V+V+GACAR  +  AL  G+ V
Sbjct: 73  DKFLFNTLLKCSKPEDSIRIFTNWASKSSLLYLNERTFVFVLGACARSASSSALRVGRIV 132

Query: 195 HCRVLKIGLGYDV-VVGTTCIHFYGSHGDCGSARKMFDEMGDRRTSATWNAMISGYWSQK 371
           H  V K+G  Y+  ++GTT +H Y  +GD   ARK+FDEM +R TS TWNAMI GY S K
Sbjct: 133 HGMVKKLGFLYESELIGTTLLHCYAKNGDLRYARKVFDEMPER-TSVTWNAMIGGYCSHK 191

Query: 372 KGVEYFAHAALKLFCGMLLCGNNAVNPNDTTMVSVLSACARIGDLVTGTCVHGRIEKRVS 551
               + A  A+ LF     CG+  V P DTTMV VL A ++ G +  G+ VHG IEK   
Sbjct: 192 DKGNHNARKAMILFRRFSCCGSG-VRPTDTTMVCVLPAISQTGLIEIGSLVHGYIEKLGF 250

Query: 552 VPH-DVYIGTCLVDMYSKCGCLKSALVVFNRMKMKNILTWTSM 677
            P  DV+IGT LVDMYSKCGCL SA  VF  MK+KN+ TWTSM
Sbjct: 251 TPEIDVFIGTGLVDMYSKCGCLNSAFSVFELMKVKNVFTWTSM 293