BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027026
         (925 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    80   9e-13
ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab...    71   4e-10
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    67   6e-09
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    63   8e-08
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    63   1e-07

>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 79.7 bits (195), Expect = 9e-13
 Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
 Frame = +3

Query: 24  RIWNLEIGASTQQFLWKLYMGGLTTGDVLLRRKFQGDVSCVFCMKEIETDYHCFLGCEWS 203
           +IW L+     + FLWKL  G L TGD L RR  +    C  C +E ET  H F  C ++
Sbjct: 17  KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 204 RRLWMASILGQRTMQNEDRDARTAVNALLEWGLKKNDSEGRCAKAYAICLLSEIWNYRNK 383
           +++W AS +  + ++       T +  LL   L     +       AI +L  +W  RN+
Sbjct: 77  QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ---LFNLAIWILWRLWKSRNQ 133

Query: 384 VKFERKETKLQDIYNHVHTHTEHVMEAYKY----NSATH--RRTEVTNAMITFTSAEQVK 545
           + F++K    Q+         +   +   Y    N   H  R  + T A   +    Q  
Sbjct: 134 LVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKW----QRP 189

Query: 546 YKNWDKIYCDGAYEKDTGRGAAAAFCKGQDGRILGA 653
              W K   DGA+   T    A    + ++G  +G+
Sbjct: 190 PSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGS 225


>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
           lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
           ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
          Length = 352

 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 1/263 (0%)
 Frame = +3

Query: 24  RIWNLEIGASTQQFLWKLYMGGLTTGDVLLRRKFQGDVSCVFCMKEIETDYHCFLGCEWS 203
           +IWNL I    + FLW+     +   + L RR    +  C  C  E+ET+ H    C   
Sbjct: 23  KIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSI 82

Query: 204 RRLWMASILGQRTMQNEDRDARTAVNALLEWGLKKNDSEGRCAKAYAICLLSEIWNYRNK 383
           R +W A+ +  + + + D+     +  LL+  L  N    +  +     LL  IW  RN 
Sbjct: 83  RPIWRAAGIPTQDLWDRDKPFEGKIRFLLD--LHDNKHIDKVCRYLPFWLLWRIWKTRND 140

Query: 384 VKFERKETKLQDIYNHVHTHTEHVMEAYKYNSATHRRTEVTNAMITFTSAEQVKYKNWDK 563
           + F  K TK +DI       T+  ++            ++     + +S      + + K
Sbjct: 141 LIFNHKVTKGEDIVGQALIDTKEWLDCQDRTHGPQHDGKLQGVRSSRSSKWCKPERGYVK 200

Query: 564 IYCDGAYEKDTGRGAAAAFCKGQDGRILGAVYSKFK-CQNAMQVECKGVELAIILTKKLQ 740
              D ++ +           +  +G  L     KF+  Q   + EC  +  AI  +  L 
Sbjct: 201 CNFDASHYEGNQSSGLGRIIRDSNGTCLDCGMGKFQGRQTIEEAECSALIWAIQASWALG 260

Query: 741 TLQIVILGDNQCLMKTVAAGESN 809
              +   GDN  ++  +  G  N
Sbjct: 261 YRHVEFEGDNANIVNLINEGGIN 283


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 67.0 bits (162), Expect = 6e-09
 Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 6/267 (2%)
 Frame = +3

Query: 21  KRIWNLEIGASTQQFLWKLYMGGLTTGDVLLRRKFQGDVSCVFCMKEIETDYHCFLGCEW 200
           K IWN+ +    + FLW+L          + RR  + +  C  C +  E   H FL C+ 
Sbjct: 152 KSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCFRLDEDGGHLFLKCKK 211

Query: 201 SRRLWMASILGQ-RTMQNEDRDARTAVNALLEWGLKKNDSEGRCAKAYAICLLSEIWNYR 377
            +++W    L   RT+      A   + ++L   L++        K   + LL   W+ R
Sbjct: 212 VKQVWRCLCLEDTRTLLASKASALEVIESILT--LREE------TKIKVVLLLWCWWSAR 263

Query: 378 NKVKFERKETKLQDIYNHVHTHTEHVMEAYKYNSATHRRTEVTNAMITFTSAEQVKYKNW 557
           NK     +    +++ N V     H+M   K       R    N         Q     +
Sbjct: 264 NKTIQGERCGSTEEVCNTV---AYHLMNMEKLQIGKSARAPPMNLKW------QPPPAGF 314

Query: 558 DKIYCDGAYEKDTGRGAAAAFCKGQDGRIL----GAVYSKFKCQNAMQVEC-KGVELAII 722
            KI CDG+Y   +G G+     +G DG  L    GA+       +A  V C KG+ELA+ 
Sbjct: 315 YKINCDGSYRAKSGLGSWGCIIRGHDGGFLAAGAGALTGISSALHAESVACMKGLELAVF 374

Query: 723 LTKKLQTLQIVILGDNQCLMKTVAAGE 803
           L      +Q V++  +  ++KT    +
Sbjct: 375 L-----GMQNVMIETDAAILKTALTSQ 396


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 63.2 bits (152), Expect = 8e-08
 Identities = 57/266 (21%), Positives = 107/266 (40%), Gaps = 9/266 (3%)
 Frame = +3

Query: 21   KRIWNLEIGASTQQFLWKLYMGGLTTGDVLLRRKFQGDVSCVFCMKEIETDYHCFLGCEW 200
            ++IW L++      FLW+     L+    L  R    + SCV C    ET  H    C +
Sbjct: 1052 QQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPF 1111

Query: 201  SRRLWMASIL----GQRTMQNEDRDARTAVNALLEWGLKKNDSEGRCAKAYAICLLSEIW 368
            +R  W  S L    G    ++  R+    ++      + K+  E     A    +L  +W
Sbjct: 1112 ARLTWAISPLPAPPGGEWAESLFRNMHHVLS------VHKSQPEESDHHALIPWILWRLW 1165

Query: 369  NYRNKVKFERKETKLQDIYNHVHTHTEHVMEAYKYNSATHRRTEVTNAMITFTSAEQVKY 548
              RN + F+ +E           T  + +++A +   A + R E    + + T    VK+
Sbjct: 1166 KNRNDLVFKGRE----------FTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRCVKW 1215

Query: 549  K----NWDKIYCDGAYEKDTGRGAAAAFCKGQDGRILG-AVYSKFKCQNAMQVECKGVEL 713
            +     W K   DGA+ KD G        +   GR+L   + +    Q+ ++ E + +  
Sbjct: 1216 QPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRW 1275

Query: 714  AIILTKKLQTLQIVILGDNQCLMKTV 791
            A++   +    +++   D+Q L+  +
Sbjct: 1276 AVLSLSRFNYRRVIFESDSQYLVSLI 1301


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 6/262 (2%)
 Frame = +3

Query: 27   IWNLEIGASTQQFLWKLYMGGLTTGDVLLRRKFQGDVSCVFCMKEIETDYHCFLGCEWSR 206
            IW+L++    + FLW+L    L    +L  R    D  C +   EIET  H    C   R
Sbjct: 1039 IWSLDVSPKVRHFLWRLCTTSLPVRSLLKHRHLTDDDLCPWGCGEIETQRHAIFDCPKMR 1098

Query: 207  RLWMASILGQRTMQNEDRDARTAVNALLEWGLKKNDSEGRCAKAY-AICLLSEIWNYRNK 383
             LW+ S  G + + + D  + +  + L+ W  +  D + R   AY A C    IW  RN 
Sbjct: 1099 DLWLDS--GCQNLCSRDA-SMSMCDLLVSW--RSLDGKLRIKGAYLAWC----IWGERNA 1149

Query: 384  VKFERKETK----LQDIYNHVHTHTEHVMEAYKYNSATHRRTEVTNAMITFTSAEQVKYK 551
              F  K T     +Q +   V  +  H    Y+      RRT      I    A+ +   
Sbjct: 1150 KIFNNKTTPSSVLMQRVSRLVEENGSHARRIYQ--PLVPRRTGSPRQWIA-PPADSI--- 1203

Query: 552  NWDKIYCDGAYEKDTGRGAAAAFCKGQDGRILGAVYSKFKCQNAMQV-ECKGVELAIILT 728
               K+  D +   D G    +   +  DG +L A   + +   A ++ E K VELA+ L 
Sbjct: 1204 ---KLNVDASLAVD-GWVGLSVIARRSDGGVLFAAVRRVRAYWAPEIAEAKAVELAVKLG 1259

Query: 729  KKLQTLQIVILGDNQCLMKTVA 794
            ++    ++++  D Q ++  ++
Sbjct: 1260 RRYGLQRVILESDCQVVINRLS 1281