BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027010
         (568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containi...   229   3e-58
emb|CBI30808.3| unnamed protein product [Vitis vinifera]              229   3e-58
ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containi...   227   9e-58
ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|2...   214   6e-54
ref|XP_002519753.1| pentatricopeptide repeat-containing protein,...   212   4e-53

>ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  229 bits (583), Expect = 3e-58
 Identities = 105/189 (55%), Positives = 143/189 (75%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           GVQ+HA V K+GY FD ++S +LITFYA+C  +++SL+VF   L  +VV+W AL+TGYGL
Sbjct: 222 GVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGL 281

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFV 361
           N KHE+AL+VF  M+  G +PNQS+F++AL SC  L+A D G+ +HT  +KLGL+ DVFV
Sbjct: 282 NCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFV 341

Query: 362 GNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEV 541
           GNSLIVMY  CG + DG+ IF  +SK+N+ SWN +IVGCAQ+G G  +L  F+QM+ + V
Sbjct: 342 GNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMV 401

Query: 542 PPNEITYVG 568
            P+EIT+ G
Sbjct: 402 EPDEITFTG 410



 Score = 65.5 bits (158), Expect = 6e-09
 Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
 Frame = +2

Query: 44  FDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGLNSKHEEALEVFHGM 223
           F TF   S+IT +     +D +  VF+     DV ++  +ITGY  N + + AL++F+ M
Sbjct: 9   FCTFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM 68

Query: 224 IMSGTMPNQSAFSNALKSCSEL-------DAFDRGKGLHTRTIKLG------LDV----- 349
            +   +   S        C++L       D       +   T+  G      ++V     
Sbjct: 69  PVKDVVSWNSMIKGCF-DCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLF 127

Query: 350 ------DVFVGNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLE 511
                 D+   NS+I  Y   G V DG+ +F  M  RN+ SW  +I G  Q+G    +L 
Sbjct: 128 YKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALG 187

Query: 512 LFDQMI--NAEVPPNEITY 562
           LF QM+    EV P   TY
Sbjct: 188 LFRQMMGCGVEVKPTSSTY 206



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 30/105 (28%), Positives = 52/105 (49%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           G ++H   VK+G   D FV  SLI  Y  C  +++ + +F+     ++V W ++I G   
Sbjct: 323 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 382

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGL 316
           +     AL  F+ M+ S   P++  F+  L +CS      +G+ L
Sbjct: 383 HGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCL 427


>emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  229 bits (583), Expect = 3e-58
 Identities = 105/189 (55%), Positives = 143/189 (75%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           GVQ+HA V K+GY FD ++S +LITFYA+C  +++SL+VF   L  +VV+W AL+TGYGL
Sbjct: 206 GVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGL 265

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFV 361
           N KHE+AL+VF  M+  G +PNQS+F++AL SC  L+A D G+ +HT  +KLGL+ DVFV
Sbjct: 266 NCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFV 325

Query: 362 GNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEV 541
           GNSLIVMY  CG + DG+ IF  +SK+N+ SWN +IVGCAQ+G G  +L  F+QM+ + V
Sbjct: 326 GNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMV 385

Query: 542 PPNEITYVG 568
            P+EIT+ G
Sbjct: 386 EPDEITFTG 394



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
 Frame = +2

Query: 47  DTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGLNSKHEEALEVFHGMI 226
           D ++ T +IT YA     D++L++F +  V DVV W ++I G    +    A ++F    
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFD--- 81

Query: 227 MSGTMPNQSAFS--NALKSCSELDAFDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGC 400
               MP +S  S    +    +    +  +GL  +        D+   NS+I  Y   G 
Sbjct: 82  ---EMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR----DIAAWNSMIYGYCCNGR 134

Query: 401 VGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMI--NAEVPPNEITY 562
           V DG+ +F  M  RN+ SW  +I G  Q+G    +L LF QM+    EV P   TY
Sbjct: 135 VEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTY 190



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 30/105 (28%), Positives = 52/105 (49%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           G ++H   VK+G   D FV  SLI  Y  C  +++ + +F+     ++V W ++I G   
Sbjct: 307 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 366

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGL 316
           +     AL  F+ M+ S   P++  F+  L +CS      +G+ L
Sbjct: 367 HGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCL 411


>ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
           gi|449533166|ref|XP_004173548.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  227 bits (579), Expect = 9e-58
 Identities = 103/189 (54%), Positives = 140/189 (74%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           GVQ+H L+VK GY F+ ++S SLI+FYA+C L+DN+  +F DN+  +VV+W AL+TGYGL
Sbjct: 258 GVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGL 317

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFV 361
           N +H +AL+VF GM+    +PNQS+ ++AL SC  L+A DRG+ +H    KLGL+ D+FV
Sbjct: 318 NCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFV 377

Query: 362 GNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEV 541
            NSL+VMYT+CG + DGI +F  MS++N+ SWN IIVGCAQ+G G  +L LF QMI   V
Sbjct: 378 SNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRV 437

Query: 542 PPNEITYVG 568
            P+EIT  G
Sbjct: 438 DPDEITLAG 446



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 44/152 (28%), Positives = 77/152 (50%)
 Frame = +2

Query: 98  VDNSLKVFEDNLVADVVMWAALITGYGLNSKHEEALEVFHGMIMSGTMPNQSAFSNALKS 277
           V++++++FE     +V+ W ++I G   N +  EAL VFH M+ S      S  + AL +
Sbjct: 190 VEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTA 248

Query: 278 CSELDAFDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGCVGDGITIFNNMSKRNLASW 457
           C+ +     G  +H   +K G   + ++  SLI  Y  C  + +  +IFN+   RN+  W
Sbjct: 249 CANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVW 308

Query: 458 NLIIVGCAQNGHGTLSLELFDQMINAEVPPNE 553
             ++ G   N   T +L++F  M+   V PN+
Sbjct: 309 TALLTGYGLNCRHTDALQVFKGMMRMSVLPNQ 340


>ref|XP_002331875.1| predicted protein [Populus trichocarpa] gi|222875393|gb|EEF12524.1|
           predicted protein [Populus trichocarpa]
          Length = 675

 Score =  214 bits (546), Expect = 6e-54
 Identities = 101/189 (53%), Positives = 135/189 (71%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           GVQ+H  VVK+G  F  F+S SLITFYA+CM ++++ K+F + L  +VV W AL+T Y  
Sbjct: 221 GVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVW 280

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFV 361
           N+KH++AL VF  M   G +PNQS FS  LK+C  L+A D+GK +HT  IKLGL+ DVFV
Sbjct: 281 NNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFV 340

Query: 362 GNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEV 541
           GNSL+VMYTECG V   + +F N++++++ SWN IIVG AQ+G G  +L  F+QMI   V
Sbjct: 341 GNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGV 400

Query: 542 PPNEITYVG 568
            PNEIT+ G
Sbjct: 401 DPNEITFTG 409



 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 53/175 (30%), Positives = 82/175 (46%)
 Frame = +2

Query: 38  YVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGLNSKHEEALEVFH 217
           +V D     +++  Y     V+  +++FE+  V DV+ W ++I G  LN K EEAL VF 
Sbjct: 132 HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFK 191

Query: 218 GMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECG 397
            M+ SG  P  S F+  L +C+    F+ G  +H   +KLG     F+  SLI  Y  C 
Sbjct: 192 KMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCM 251

Query: 398 CVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEVPPNEITY 562
            +     IFN    +N+  W  ++     N     +L +F  M      PN+ T+
Sbjct: 252 KIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTF 306



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/103 (31%), Positives = 53/103 (51%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           G ++H + +K+G   D FV  SL+  Y  C  V++++ VF +    D+V W ++I G   
Sbjct: 322 GKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQ 381

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGK 310
           +     AL  F+ MI  G  PN+  F+  L +CS      +G+
Sbjct: 382 HGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGR 424


>ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541170|gb|EEF42726.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 562

 Score =  212 bits (539), Expect = 4e-53
 Identities = 104/189 (55%), Positives = 131/189 (69%)
 Frame = +2

Query: 2   GVQLHALVVKIGYVFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGL 181
           GVQ+H  V K+GY  D F+S SLITFY++C  V N+ +VF + L  +VV+W AL+TG  L
Sbjct: 317 GVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVFNETLSKNVVIWTALLTGCEL 376

Query: 182 NSKHEEALEVFHGMIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFV 361
           NSKHE+AL VF  MI  G  PNQS F +A  SC  L+A DRGK +HT T KLGL+ DVFV
Sbjct: 377 NSKHEDALRVFSDMIKMGVFPNQSTFISAFNSCRGLEALDRGKEIHTVTAKLGLETDVFV 436

Query: 362 GNSLIVMYTECGCVGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEV 541
           GNSL+VMY ECG V D + +F  + ++N  SWN IIVG +Q+GHG  +L  F+QMI   V
Sbjct: 437 GNSLVVMYNECGNVNDAVAVFKKIKEKNDVSWNSIIVGSSQHGHGIWALIFFNQMIRTCV 496

Query: 542 PPNEITYVG 568
            P+EIT  G
Sbjct: 497 DPDEITLTG 505



 Score = 98.2 bits (243), Expect = 8e-19
 Identities = 54/175 (30%), Positives = 85/175 (48%)
 Frame = +2

Query: 41  VFDTFVSTSLITFYAHCMLVDNSLKVFEDNLVADVVMWAALITGYGLNSKHEEALEVFHG 220
           V D     ++I  Y     + + L +FE     +V+ W ++I G   N K EEAL +F  
Sbjct: 229 VRDVAAWNAMIFGYCGNRRIADGLNLFEKMPCRNVISWTSMIGGLDQNGKSEEALILFGK 288

Query: 221 MIMSGTMPNQSAFSNALKSCSELDAFDRGKGLHTRTIKLGLDVDVFVGNSLIVMYTECGC 400
           M+ SG  P  + ++  L +C+    F+ G  +H R  KLG   D F+  SLI  Y+ C  
Sbjct: 289 MMDSGVKPTSTTYACVLTACANAMDFNMGVQVHGRVSKLGYKSDEFISASLITFYSNCKQ 348

Query: 401 VGDGITIFNNMSKRNLASWNLIIVGCAQNGHGTLSLELFDQMINAEVPPNEITYV 565
           V +   +FN    +N+  W  ++ GC  N     +L +F  MI   V PN+ T++
Sbjct: 349 VKNAHQVFNETLSKNVVIWTALLTGCELNSKHEDALRVFSDMIKMGVFPNQSTFI 403