BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026454
         (938 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi...   396   e-108
ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi...   392   e-107
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ...   366   4e-99
ref|NP_199192.1| pentatricopeptide repeat-containing protein [Ar...   321   1e-85
ref|XP_002863633.1| pentatricopeptide repeat-containing protein ...   315   7e-84

>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  396 bits (1017), Expect = e-108
 Identities = 186/305 (60%), Positives = 236/305 (77%), Gaps = 7/305 (2%)
 Frame = +1

Query: 43  IFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSH 222
           IFN I NP++FLYNTLISS T++    H+AFSLY+ ILTH +L+P  FT+PSL KA  SH
Sbjct: 58  IFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASH 117

Query: 223 PWLYYGKPLHAHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTI 402
           PWL +G PLHAH+LKFL P YD FVQ SLLNFY+K G L VSRYLFDQI+EPDLATWNT+
Sbjct: 118 PWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTM 177

Query: 403 LSAYAKSSSN-------EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQ 561
           L+AYA+S+S+       ED  +S+E L LF +MQ+S  +PNE TLVALI AC+NLG  +Q
Sbjct: 178 LAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQ 237

Query: 562 GTWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKDTLCYNAMIGGFAI 741
           G WAH Y+LRNNL+LNRFV TAL++ Y+KCGCLNLA Q+F+++  +DT CYNAMIGGFA+
Sbjct: 238 GAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAV 297

Query: 742 HGQSRGALYVFDRMRCDGVRPDDITLLVVMYTCAHAGLVKDGRRIFNTMKDEYGIEPKLE 921
           HG    AL ++  M+ + + PD  T++V M+ C+H GLV++G  IF +MK  +G+EPKLE
Sbjct: 298 HGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLE 357

Query: 922 HYGCL 936
           HYGCL
Sbjct: 358 HYGCL 362


>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  392 bits (1006), Expect = e-107
 Identities = 187/300 (62%), Positives = 234/300 (78%), Gaps = 2/300 (0%)
 Frame = +1

Query: 43  IFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSH 222
           IFN I NP+IFLYNTLISS  N   HTHIAFSLYS++LTH +LKP  FT+PSL KA  S 
Sbjct: 62  IFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQ 121

Query: 223 PWLYYGKPLHAHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTI 402
           PWL +G+ LH H+LKFL P+ D FVQA+LLN+Y+KCG +   RYLF+QI++PDLA+WN+I
Sbjct: 122 PWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSI 181

Query: 403 LSAYAKSSSN--EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAH 576
           LSAY  +S    ED SLS+E L LF EMQ SL + NE TLVALI ACA LG  +QG WAH
Sbjct: 182 LSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAH 241

Query: 577 AYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKDTLCYNAMIGGFAIHGQSR 756
            Y+L++NL+LN FV TALI+ Y+KCGCL+LA Q+F+Q+  +DTLCYNAMIGGFAIHG   
Sbjct: 242 VYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 301

Query: 757 GALYVFDRMRCDGVRPDDITLLVVMYTCAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCL 936
            AL +F +M  +G+ PDD+TL+V M +C+H GLV++G  +F +MK+ YG+EPKLEHYGCL
Sbjct: 302 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 361


>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484374|gb|AES65577.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  366 bits (940), Expect = 4e-99
 Identities = 176/310 (56%), Positives = 232/310 (74%), Gaps = 12/310 (3%)
 Frame = +1

Query: 43   IFNQISNPSIFLYNTLISSFTN--NPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASC 216
            IFN ISNP+IFLYNTLISS  N  N +  H+AFSLY++ILT+ +L+P  FT+PSL KA C
Sbjct: 202  IFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACC 261

Query: 217  SHP-WLYYGKPLHAHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATW 393
            S+  W +YG  LH H+LKFL P +D+FVQASLLNFY+K G + VSRY+FD+I EPDLATW
Sbjct: 262  SNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATW 321

Query: 394  NTILSAYAKSSSN-------EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGV 552
            N IL+AYA+SSS        +D   S+E+L+LF +MQV   RPNE T+VALI AC+NLG 
Sbjct: 322  NVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGA 381

Query: 553  FNQGTWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVR--KDTLCYNAMI 726
             +QG W H ++LRN +++NRFV TA ++ Y+KCGCLNLA QVF+++    +D+ CY AMI
Sbjct: 382  VSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMI 441

Query: 727  GGFAIHGQSRGALYVFDRMRCDGVRPDDITLLVVMYTCAHAGLVKDGRRIFNTMKDEYGI 906
            GGFA+HG    AL ++ +M+  G+ PD  T +V M+ C+H GLV++G  IF +MK+ +G+
Sbjct: 442  GGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGV 501

Query: 907  EPKLEHYGCL 936
            EPKLEHYGCL
Sbjct: 502  EPKLEHYGCL 511


>ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g43790 gi|10177948|dbj|BAB11307.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332007627|gb|AED95010.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 460

 Score =  321 bits (823), Expect = 1e-85
 Identities = 165/318 (51%), Positives = 220/318 (69%), Gaps = 6/318 (1%)
 Frame = +1

Query: 1   LHVXXXXXXXXXXXIFNQISNPSIFLYNTLISSFTNNPH--HTHIAFSLYSQILTHNS-- 168
           LH+           I  QI NPS+FLYNTLISS  +N +   TH+AFSLY QIL+  S  
Sbjct: 48  LHLSSTVCLSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNF 107

Query: 169 LKPTCFTYPSLLKAS-CSHPWLYYGKPLHAHILKFLVP-SYDHFVQASLLNFYSKCGMLD 342
           ++P  FTYPSL KAS     W  +G+ LHAH+LKFL P ++D FVQA+L+ FY+ CG L 
Sbjct: 108 VRPNEFTYPSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLR 167

Query: 343 VSRYLFDQITEPDLATWNTILSAYAKSSSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVA 522
            +R LF++I EPDLATWNT+L+AYA S   + +    E L LF  MQV   RPNE +LVA
Sbjct: 168 EARSLFERIREPDLATWNTLLAAYANSEEIDSDE---EVLLLFMRMQV---RPNELSLVA 221

Query: 523 LIGACANLGVFNQGTWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKD 702
           LI +CANLG F +G WAH Y+L+NNL LN+FV T+LI+ Y+KCGCL+ A++VF+++ ++D
Sbjct: 222 LIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRD 281

Query: 703 TLCYNAMIGGFAIHGQSRGALYVFDRMRCDGVRPDDITLLVVMYTCAHAGLVKDGRRIFN 882
             CYNAMI G A+HG  +  + ++  +   G+ PD  T +V +  C+H+GLV +G +IFN
Sbjct: 282 VSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFN 341

Query: 883 TMKDEYGIEPKLEHYGCL 936
           +MK  YGIEPK+EHYGCL
Sbjct: 342 SMKAVYGIEPKVEHYGCL 359



 Score = 73.6 bits (179), Expect = 6e-11
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
 Frame = +1

Query: 241 KPLHAHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTILSAYAK 420
           K +HA I+   +    H    S L   S    L  +  +  QI  P +  +NT++S+   
Sbjct: 26  KQIHAQIIT--IGLSHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLISSIVS 83

Query: 421 SSSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACA-NLGVFNQGTWAHAYILR-- 591
           + ++    L+          + +  RPNE T  +L  A   +      G   HA++L+  
Sbjct: 84  NHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHVLKFL 143

Query: 592 NNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKDTLCYNAMIGGFAIHGQ---SRGA 762
             +  +RFV  AL+ FYA CG L  A+ +FE++   D   +N ++  +A   +       
Sbjct: 144 EPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEV 203

Query: 763 LYVFDRMRCDGVRPDDITLLVVMYTCAHAG 852
           L +F RM+   VRP++++L+ ++ +CA+ G
Sbjct: 204 LLLFMRMQ---VRPNELSLVALIKSCANLG 230


>ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309468|gb|EFH39892.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 460

 Score =  315 bits (808), Expect = 7e-84
 Identities = 163/318 (51%), Positives = 219/318 (68%), Gaps = 6/318 (1%)
 Frame = +1

Query: 1   LHVXXXXXXXXXXXIFNQISNPSIFLYNTLISSFTNNPH--HTHIAFSLYSQILTHNS-- 168
           LH+           I  QI NPS+FLYNTLISS  +N +   TH+AFSLY QIL+  S  
Sbjct: 48  LHLSSTVCLSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNF 107

Query: 169 LKPTCFTYPSLLKAS-CSHPWLYYGKPLHAHILKFLVP-SYDHFVQASLLNFYSKCGMLD 342
           ++P  FTYPSL KAS     W  +G+ LHAH+LKF+ P ++D FVQA+L+ FY+ CG L 
Sbjct: 108 VRPNEFTYPSLFKASGFETKWHRHGRALHAHVLKFIEPVNHDRFVQAALVGFYANCGELR 167

Query: 343 VSRYLFDQITEPDLATWNTILSAYAKSSSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVA 522
            +R L ++I EPDLATWNT+L+AYA S   E +    E L LF  MQV   RPNE +LVA
Sbjct: 168 EARSLLERIREPDLATWNTLLAAYANSEETESDE---EVLKLFVRMQV---RPNELSLVA 221

Query: 523 LIGACANLGVFNQGTWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKD 702
           LI +CANLG F  G WAH Y+L+ NL LN+FV T+LI+FY+KCGCL+ A+QVF+++  +D
Sbjct: 222 LIKSCANLGEFWGGVWAHVYLLKKNLTLNQFVGTSLIDFYSKCGCLSFARQVFDEMSERD 281

Query: 703 TLCYNAMIGGFAIHGQSRGALYVFDRMRCDGVRPDDITLLVVMYTCAHAGLVKDGRRIFN 882
             C+NAMI G A+HG  +  + +++ +   G+ PD+ T +V +  C+H+GLV +G +IF+
Sbjct: 282 ISCFNAMIRGLAVHGFGQEGIELYNSLISQGLVPDNATFVVTISACSHSGLVDEGLQIFH 341

Query: 883 TMKDEYGIEPKLEHYGCL 936
           +MK  YGIEPK+EHYGCL
Sbjct: 342 SMKTVYGIEPKVEHYGCL 359



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 6/210 (2%)
 Frame = +1

Query: 241 KPLHAHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTILSAYAK 420
           K +HA I+   +    H    S L   S    L  +  +  QI  P +  +NT++S+   
Sbjct: 26  KQIHAQIIT--IGLSHHTYPLSKLLHLSSTVCLSYALSILRQIPNPSVFLYNTLISSIVS 83

Query: 421 SSSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACA-NLGVFNQGTWAHAYILR-- 591
           + ++    L+          + +  RPNE T  +L  A          G   HA++L+  
Sbjct: 84  NHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFETKWHRHGRALHAHVLKFI 143

Query: 592 NNLELNRFVATALIEFYAKCGCLNLAKQVFEQVVRKDTLCYNAMIGGFAIHGQSRG---A 762
             +  +RFV  AL+ FYA CG L  A+ + E++   D   +N ++  +A   ++      
Sbjct: 144 EPVNHDRFVQAALVGFYANCGELREARSLLERIREPDLATWNTLLAAYANSEETESDEEV 203

Query: 763 LYVFDRMRCDGVRPDDITLLVVMYTCAHAG 852
           L +F RM+   VRP++++L+ ++ +CA+ G
Sbjct: 204 LKLFVRMQ---VRPNELSLVALIKSCANLG 230