BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026409
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]   102   3e-20
ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containi...   100   1e-19
emb|CBI28459.3| unnamed protein product [Vitis vinifera]               89   4e-16
ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002511099.1| pentatricopeptide repeat-containing protein,...    83   2e-14

>emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/122 (44%), Positives = 78/122 (63%)
 Frame = -3

Query: 367 MSKFSQKLLANRNNFTKKPPSCLKPFHLFNTTSKHDNSSSVEEITSILKHHNWKYLMESS 188
           +S+ S  LL ++N FT       K      +TS  +  +  ++I+  LK +NWK +M SS
Sbjct: 6   LSQRSPLLLTDQNGFTNT--KFFKSIEFSTSTSTSETLNFSQQISDFLKQNNWKTIMVSS 63

Query: 187 HIPNNLNPEIIQLVVQQNKITDLKRLLSFFYWSSTQMGGNKPQNFNSFSFLAVYLWNAKL 8
           HIP+ LNP++I+ V+ QN++ D KRLL FFYWS +QMG   PQ  +SFS LAV L N++L
Sbjct: 64  HIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSEL 121

Query: 7   YG 2
           +G
Sbjct: 122 FG 123


>ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  100 bits (249), Expect = 1e-19
 Identities = 53/122 (43%), Positives = 77/122 (63%)
 Frame = -3

Query: 367 MSKFSQKLLANRNNFTKKPPSCLKPFHLFNTTSKHDNSSSVEEITSILKHHNWKYLMESS 188
           +S+ S  LL ++N FT       K      +T   +  +  ++I+  LK +NWK +M SS
Sbjct: 4   LSQRSPLLLTDQNGFTNT--KFFKSIEFSTSTPTSETLNFSQQISDFLKQNNWKTIMVSS 61

Query: 187 HIPNNLNPEIIQLVVQQNKITDLKRLLSFFYWSSTQMGGNKPQNFNSFSFLAVYLWNAKL 8
           HIP+ LNP++I+ V+ QN++ D KRLL FFYWS +QMG   PQ  +SFS LAV L N++L
Sbjct: 62  HIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMG--VPQFLDSFSILAVQLCNSEL 119

Query: 7   YG 2
           +G
Sbjct: 120 FG 121


>emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
 Frame = -3

Query: 343 LANRNNFTKKPPSCLKPFHLFNTTSKHDNSSSVEEITSILKHHNWKYLMESSHIPNNLNP 164
           L  R+   K  P   K     ++ +   N  SV EIT++L  HNW+ LMESS IP  LN 
Sbjct: 4   LTCRSFMAKPRPISHKAASFSSSQALTQNEDSVREITTLLNSHNWQALMESSDIPKKLNT 63

Query: 163 EIIQLVVQQNKITDLKRLLSFFYWSSTQMG-GNKPQNFNSFSFLAVYLWNAKLYG 2
           +II+ V+ QN++ D KRLL+FFYWS  +MG     Q+ +  S LAV L N+  YG
Sbjct: 64  DIIRSVILQNQVGDPKRLLNFFYWSQHKMGTSTAQQDLDVLSALAVNLCNSNWYG 118


>ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = -3

Query: 259 NSSSVEEITSILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITDLKRLLSFFYWSSTQ 80
           N  SV EIT++L  HNW+ LMESS IP  LN +II+ V+ QN++ D KRLL+FFYWS  +
Sbjct: 23  NEDSVREITTLLNSHNWQALMESSDIPKKLNTDIIRSVILQNQVGDPKRLLNFFYWSQHK 82

Query: 79  MG-GNKPQNFNSFSFLAVYLWNAKLYG 2
           MG     Q+ +  S LAV L N+  YG
Sbjct: 83  MGTSTAQQDLDVLSALAVNLCNSNWYG 109


>ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550214|gb|EEF51701.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1151

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/91 (45%), Positives = 67/91 (73%)
 Frame = -3

Query: 274 TSKHDNSSSVEEITSILKHHNWKYLMESSHIPNNLNPEIIQLVVQQNKITDLKRLLSFFY 95
           T++ DN+  V+EITS+LK  NW++L+ESS +PN LNP+++ LV++QN++ D KRL  FF 
Sbjct: 38  TNQSDNT--VKEITSLLKQKNWQFLIESSPLPNKLNPDVVFLVIKQNQVIDPKRLHGFFN 95

Query: 94  WSSTQMGGNKPQNFNSFSFLAVYLWNAKLYG 2
           W +++   +  QN ++FS L++ L N+ L+G
Sbjct: 96  WVNSRTVFS--QNLSTFSILSLILCNSGLFG 124