BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026401
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protei...   189   2e-46
ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group] g...   189   2e-46
ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containi...   186   1e-45
ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containi...   178   4e-43
emb|CAN67095.1| hypothetical protein VITISV_016806 [Vitis vinifera]   178   4e-43

>dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 381

 Score =  189 bits (481), Expect = 2e-46
 Identities = 89/140 (63%), Positives = 117/140 (83%)
 Frame = +3

Query: 6   VDEVRNSMKELGIKKSPGSSLIELDGDVHEFVAGDRSHHQTNKINMMLDEIARLLSLEGH 185
           V EVR+SMK+  I K PGSS++ELDG V+EF++GD SH Q+++I  MLDEI + LSL+GH
Sbjct: 231 VQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGH 290

Query: 186 VPTVKGIPYDIDEEEKEQALSQHSEKLAVAFGLINTKQGTPLRIVKNLRVCEDCHSAMKL 365
            P  K + +DIDEE+KE  +SQHSEKLAVAFGLINT++G  +RIVKNLR+CEDCHS MK+
Sbjct: 291 KPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKV 350

Query: 366 ISKVFNWLIVIRDRSRFHHF 425
           +S+V++ +IV+RDR+RFHHF
Sbjct: 351 VSEVYDRVIVVRDRNRFHHF 370


>ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
           gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa
           Japonica Group]
          Length = 555

 Score =  189 bits (481), Expect = 2e-46
 Identities = 89/140 (63%), Positives = 117/140 (83%)
 Frame = +3

Query: 6   VDEVRNSMKELGIKKSPGSSLIELDGDVHEFVAGDRSHHQTNKINMMLDEIARLLSLEGH 185
           V EVR+SMK+  I K PGSS++ELDG V+EF++GD SH Q+++I  MLDEI + LSL+GH
Sbjct: 405 VQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGH 464

Query: 186 VPTVKGIPYDIDEEEKEQALSQHSEKLAVAFGLINTKQGTPLRIVKNLRVCEDCHSAMKL 365
            P  K + +DIDEE+KE  +SQHSEKLAVAFGLINT++G  +RIVKNLR+CEDCHS MK+
Sbjct: 465 KPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKV 524

Query: 366 ISKVFNWLIVIRDRSRFHHF 425
           +S+V++ +IV+RDR+RFHHF
Sbjct: 525 VSEVYDRVIVVRDRNRFHHF 544


>ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  186 bits (473), Expect = 1e-45
 Identities = 86/140 (61%), Positives = 117/140 (83%)
 Frame = +3

Query: 6   VDEVRNSMKELGIKKSPGSSLIELDGDVHEFVAGDRSHHQTNKINMMLDEIARLLSLEGH 185
           V EVR+SMKE  I K PGSS++ELDG V+EF++GD SH Q+++I  MLDE+ + LSL+GH
Sbjct: 421 VQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGH 480

Query: 186 VPTVKGIPYDIDEEEKEQALSQHSEKLAVAFGLINTKQGTPLRIVKNLRVCEDCHSAMKL 365
            P+ K + +DIDEE+KE  +SQHSEKLA+A GLI+T++G  +RIVKNLR+CEDCHS MK+
Sbjct: 481 RPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKI 540

Query: 366 ISKVFNWLIVIRDRSRFHHF 425
           +S+V++ +IV+RDR+RFHHF
Sbjct: 541 VSEVYDRVIVVRDRNRFHHF 560


>ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  178 bits (452), Expect = 4e-43
 Identities = 88/141 (62%), Positives = 109/141 (77%)
 Frame = +3

Query: 3   EVDEVRNSMKELGIKKSPGSSLIELDGDVHEFVAGDRSHHQTNKINMMLDEIARLLSLEG 182
           +V +VR +M   G+KK+PG SL+EL   +HEFV GDRSH QT +I + L EI +LL LEG
Sbjct: 462 DVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEG 521

Query: 183 HVPTVKGIPYDIDEEEKEQALSQHSEKLAVAFGLINTKQGTPLRIVKNLRVCEDCHSAMK 362
           +VP +  +  DI+EEEKE ALS HSEK+A+AF LINT  G P+R+VKNLRVC DCH A+K
Sbjct: 522 YVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIK 581

Query: 363 LISKVFNWLIVIRDRSRFHHF 425
           LISKVF+  IV+RDRSRFHHF
Sbjct: 582 LISKVFDREIVVRDRSRFHHF 602


>emb|CAN67095.1| hypothetical protein VITISV_016806 [Vitis vinifera]
          Length = 348

 Score =  178 bits (452), Expect = 4e-43
 Identities = 88/141 (62%), Positives = 109/141 (77%)
 Frame = +3

Query: 3   EVDEVRNSMKELGIKKSPGSSLIELDGDVHEFVAGDRSHHQTNKINMMLDEIARLLSLEG 182
           +V +VR +M   G+KK+PG SL+EL   +HEFV GDRSH QT +I + L EI +LL LEG
Sbjct: 197 DVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEG 256

Query: 183 HVPTVKGIPYDIDEEEKEQALSQHSEKLAVAFGLINTKQGTPLRIVKNLRVCEDCHSAMK 362
           +VP +  +  DI+EEEKE ALS HSEK+A+AF LINT  G P+R+VKNLRVC DCH A+K
Sbjct: 257 YVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIK 316

Query: 363 LISKVFNWLIVIRDRSRFHHF 425
           LISKVF+  IV+RDRSRFHHF
Sbjct: 317 LISKVFDREIVVRDRSRFHHF 337