BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026378
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002884209.1| pentatricopeptide repeat-containing protein ...    68   9e-10
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th...    66   3e-09
emb|CBI36755.3| unnamed protein product [Vitis vinifera]               65   7e-09
ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat...    65   7e-09
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi...    62   6e-08

>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330049|gb|EFH60468.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 534

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 27/65 (41%), Positives = 47/65 (72%)
 Frame = -3

Query: 206 IDQDNILITRMISICSSSGIMNYASRLFNHVQEPDLILWNSMLKGYTRNNLFEEAIFLYV 27
           + Q + ++T+M+ +C   G M+YA+RLFN V  P++ L+NS+++ YT N+L+ + I +Y 
Sbjct: 38  LSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYK 97

Query: 26  QLLQK 12
           QLL+K
Sbjct: 98  QLLRK 102


>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
           gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
           [Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
           editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 27/67 (40%), Positives = 46/67 (68%)
 Frame = -3

Query: 206 IDQDNILITRMISICSSSGIMNYASRLFNHVQEPDLILWNSMLKGYTRNNLFEEAIFLYV 27
           + Q + ++T+M+  C     M+YA+RLFN V  P++ L+NS+++ YT N+L+ + I +Y 
Sbjct: 38  LSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYK 97

Query: 26  QLLQKGF 6
           QLL+K F
Sbjct: 98  QLLRKSF 104


>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
 Frame = -3

Query: 209 SIDQDNILITRMISIC--SSSGIMNYASRLFNHVQEPDLILWNSMLKGYTRNNLFEEAIF 36
           S+ QD I ++R++  C  S SG +NYA  +FN +  P L +WNSM+KGY+ +   +EA+ 
Sbjct: 32  SVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALT 91

Query: 35  LYVQLLQKGF 6
           +Y ++ QKG+
Sbjct: 92  MYREMRQKGY 101


>ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
 Frame = -3

Query: 209 SIDQDNILITRMISIC--SSSGIMNYASRLFNHVQEPDLILWNSMLKGYTRNNLFEEAIF 36
           S+ QD I ++R++  C  S SG +NYA  +FN +  P L +WNSM+KGY+ +   +EA+ 
Sbjct: 32  SVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALT 91

Query: 35  LYVQLLQKGF 6
           +Y ++ QKG+
Sbjct: 92  MYREMRQKGY 101


>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 27/65 (41%), Positives = 42/65 (64%)
 Frame = -3

Query: 212 KSIDQDNILITRMISICSSSGIMNYASRLFNHVQEPDLILWNSMLKGYTRNNLFEEAIFL 33
           + +DQDNIL++R I  CSS G  +Y+  +F H   PD+ L+N+++K  +   L  EAI L
Sbjct: 67  RGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILL 126

Query: 32  YVQLL 18
           Y ++L
Sbjct: 127 YNRIL 131