BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026283
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    67   1e-09
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    65   8e-09
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...    64   1e-08
gb|AEL30350.1| RNA-directed DNA polymerase [Arachis hypogaea]          64   2e-08
dbj|BAM28750.1| reverse transcriptase-like protein, partial [Cam...    63   2e-08

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 28/128 (21%)
 Frame = +1

Query: 4    KSEIFSGIITN*VNNKLASWKSKLLSQAARTVLIKSISSAIPTFHMHPLYLK-------- 159
            K  +F  I    V  KL  WK K LSQA R VLIK+++ AIPT+ M    +         
Sbjct: 770  KKRVFQAIQDR-VWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQCFVIPKSIIDGIE 828

Query: 160  --------------------SWKFICQSKKLGGIGIRDMTINNQAHLSRIIWQVITNPSS 279
                                +W+ +   KK GG+GIR+  + N+A L++  W+++T P S
Sbjct: 829  KMCRNFFWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDS 888

Query: 280  LLADQLKG 303
            L+A  +KG
Sbjct: 889  LMARVIKG 896


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 27/112 (24%)
 Frame = +1

Query: 46   NKLASWKSKLLSQAARTVLIKSISSAIPTFHMHPLYL----------------------- 156
            N++  W+ KLLS+A + VLIK+++ AIP + M    L                       
Sbjct: 1062 NRVHGWEGKLLSKAGKEVLIKTVAQAIPNYTMSVFQLPAGTSDAINKCVARFWWGKEGGK 1121

Query: 157  ----KSWKFICQSKKLGGIGIRDMTINNQAHLSRIIWQVITNPSSLLADQLK 300
                + W  +C SKK GG+G RD+++ NQA L +  W+++  P SL+A  LK
Sbjct: 1122 GIHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLK 1173


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 28/127 (22%)
 Frame = +1

Query: 4   KSEIFSGIITN*VNNKLASWKSKLLSQAARTVLIKSISSAIPTFHM-------------- 141
           +S+ FS  + + V  +L  WK +LLS+A + +LIKS+  +IPT+ M              
Sbjct: 217 RSQTFS-YLKDRVWKRLQGWKERLLSKAGKEILIKSVVQSIPTYAMSCFDLTKTLCNELG 275

Query: 142 --------------HPLYLKSWKFICQSKKLGGIGIRDMTINNQAHLSRIIWQVITNPSS 279
                         + ++  SW+ +C+ K+ GGIG RD+ + N A L+R  W++I  P S
Sbjct: 276 SLVCRFWWAQQENENKVHWVSWELLCRRKEQGGIGYRDLHLFNLAMLARQGWRLIMEPMS 335

Query: 280 LLADQLK 300
           L A  L+
Sbjct: 336 LCAQVLR 342


>gb|AEL30350.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 673

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
 Frame = +1

Query: 16  FSGIITN*VNNKLASWKSKLLSQAARTVLIKSISSAIPTFHM------------------ 141
           F+G++   + ++LASWK  LL++A R  L+ S+++AIPT+ M                  
Sbjct: 98  FNGVLDK-IRSRLASWKGSLLNRAGRLCLVNSVAAAIPTYQMQVSIFPKGIISKLESMMR 156

Query: 142 ----------HPLYLKSWKFICQSKKLGGIGIRDMTINNQAHLSRIIWQVITNPSSLLAD 291
                       L L SWK +   KK GG+GIRD    N A L +++W     P+ L   
Sbjct: 157 NFLWKGQVDGRGLNLVSWKVLVTPKKYGGLGIRDPYCVNIALLGKLVWTFFQQPNKLWVQ 216

Query: 292 QLKGLSNTAL 321
            L     ++L
Sbjct: 217 LLDAKYRSSL 226


>dbj|BAM28750.1| reverse transcriptase-like protein, partial [Camellia sinensis var.
           sinensis]
          Length = 255

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 28/121 (23%)
 Frame = +1

Query: 22  GIITN*VNNKLASWKSKLLSQAARTVLIKSISSAIPTFHM-------------------- 141
           G +   V  +L  WK K LS A R VLIKS++ AIPT+ M                    
Sbjct: 15  GFVKERVWTRLNGWKEKFLSVAGREVLIKSVAQAIPTYIMSCFRLPDGVCHEIESMVCNF 74

Query: 142 --------HPLYLKSWKFICQSKKLGGIGIRDMTINNQAHLSRIIWQVITNPSSLLADQL 297
                     ++  SWK +C+SK  GG+G R +   N A L++  W+++  P SL+A   
Sbjct: 75  WWXQKEETRKIHWTSWKQLCKSKLQGGMGFRCLQXFNSALLAKQCWRLVQRPQSLVARVF 134

Query: 298 K 300
           K
Sbjct: 135 K 135