BLASTX nr result
ID: Coptis21_contig00026267
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00026267
(342 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002513855.1| pentatricopeptide repeat-containing protein,... 107 1e-35
ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. l... 94 3e-33
gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indi... 100 3e-32
ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containi... 98 4e-32
ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group] g... 100 5e-32
>ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546941|gb|EEF48438.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 498
Score = 107 bits (267), Expect(2) = 1e-35
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G F +FS+M EGFLPNEFTVC++LKACG ++ +KFGRQLHCAIVK M+ +DVF+GTS
Sbjct: 148 GEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTS 207
Query: 37 LVSMYVKCSE 8
LV MY KC E
Sbjct: 208 LVDMYAKCGE 217
Score = 67.8 bits (164), Expect(2) = 1e-35
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEAF 204
IV FYAQCGDL S+F AF + E+DVV WTS+I+AC+Q G GEEAF
Sbjct: 107 IVSFYAQCGDLESAFCAFFQVREKDVVCWTSVISACSQQGRGEEAF 152
Score = 52.8 bits (125), Expect(2) = 2e-12
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G LF M+ + N TV SVL+ACG GR++H I+K ++V++G++
Sbjct: 249 GEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGST 308
Query: 37 LVSMYVKCSE 8
LV Y KC E
Sbjct: 309 LVWFYCKCGE 318
Score = 43.9 bits (102), Expect(2) = 2e-12
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
+V YA+CG++ S F+ M +R+ V+WTS+I A+ G GEEA
Sbjct: 208 LVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSIIAGYARKGLGEEA 252
Score = 52.4 bits (124), Expect(2) = 8e-11
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = -3
Query: 190 EMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTSLVSMYVKCS 11
EM EG PNEFT S LKAC ++ G+ +H K +++V+VG++L+ MY KC
Sbjct: 359 EMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIYMYSKCG 418
Query: 10 ETS 2
S
Sbjct: 419 YLS 421
Score = 38.9 bits (89), Expect(2) = 8e-11
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
+V+FY +CG+ + + + M R+VVSWT+MI+ G+ EA
Sbjct: 309 LVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFEA 353
Score = 44.7 bits (104), Expect(2) = 2e-08
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -3
Query: 199 LFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTSLVSMYV 20
LFSE+ G N T +L C + + GRQ+H +VK + N + V +++VS Y
Sbjct: 54 LFSELIENGVTANNRTFVCILNVCSKRLDFELGRQIHACVVKGNWRN-LIVDSAIVSFYA 112
Query: 19 KCSE 8
+C +
Sbjct: 113 QCGD 116
Score = 38.5 bits (88), Expect(2) = 2e-08
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
++ YA+ G+L + + F+ M ER VVSWT+MI G +EA
Sbjct: 7 LISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEA 51
>ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 94.4 bits (233), Expect(2) = 3e-33
Identities = 42/72 (58%), Positives = 52/72 (72%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G + +F M + GFLPNEFTVCS+LKAC E+ I+FGRQ+H +VK+M DVFVGTS
Sbjct: 265 GNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTS 324
Query: 37 LVSMYVKCSETS 2
L+ MY KC E S
Sbjct: 325 LMDMYAKCGEIS 336
Score = 72.4 bits (176), Expect(2) = 3e-33
Identities = 28/50 (56%), Positives = 44/50 (88%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEAFFVVL 192
+V+FYAQCG+L+S+ RAF+MM E+DV+SWT++I+AC++ GHG +A F+ +
Sbjct: 224 LVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGNKAIFMFI 273
Score = 57.0 bits (136), Expect(2) = 2e-14
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G LF M+ + N TV S+L+ACG + G++LH I+K +V++G++
Sbjct: 366 GEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGST 425
Query: 37 LVSMYVKCSET 5
LV +Y KC E+
Sbjct: 426 LVWLYCKCGES 436
Score = 46.6 bits (109), Expect(2) = 2e-14
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = -2
Query: 329 YAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
YA+CG++S + F+ M R+ V+WTS+I A A+ G GEEA
Sbjct: 329 YAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEA 369
Score = 54.7 bits (130), Expect(2) = 3e-14
Identities = 27/63 (42%), Positives = 35/63 (55%)
Frame = -3
Query: 190 EMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTSLVSMYVKCS 11
EM EG PN FT S LKAC ++ GR +H K ++VFVG++L+ MY KC
Sbjct: 476 EMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCG 535
Query: 10 ETS 2
S
Sbjct: 536 FVS 538
Score = 48.5 bits (114), Expect(2) = 3e-14
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
+V+ Y +CG+ +F + RDVVSWT+MI+ C+ GH EA
Sbjct: 426 LVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEA 470
>gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 100 bits (249), Expect(2) = 3e-32
Identities = 42/70 (60%), Positives = 57/70 (81%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G + +FSEM SEGF PNEFTVCSVLKAC E+ ++FG+QLHCA++KKM+ ND+ +G++
Sbjct: 531 GGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSA 590
Query: 37 LVSMYVKCSE 8
LV+MY +C E
Sbjct: 591 LVTMYARCGE 600
Score = 63.2 bits (152), Expect(2) = 3e-32
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
I FYAQCGD++S+ F+ M RDV+SWT+MITA QHGHG +A
Sbjct: 490 IAHFYAQCGDVASASAIFDKMASRDVISWTTMITAYVQHGHGGQA 534
Score = 53.5 bits (127), Expect(2) = 4e-15
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEAFFV 198
+V YA+CG++ + F+MM R+ ++WTSMI+ AQ GHGE+A F+
Sbjct: 591 LVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAIFL 638
Score = 52.4 bits (124), Expect(2) = 4e-15
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G + LF +M+ N T+ +L ACG +++ G++LH I+K +++ +G++
Sbjct: 632 GEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGST 691
Query: 37 LVSMYVKCSE 8
LV Y KC E
Sbjct: 692 LVWFYCKCGE 701
Score = 54.3 bits (129), Expect = 1e-05
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = -3
Query: 244 SQLVHNMDTGRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMF 65
+ L HN++ + L +M +G PN +T S LKAC +++GR++H + K
Sbjct: 728 NNLGHNVEALKSL----DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQD 783
Query: 64 NNDVFVGTSLVSMYVKCSE 8
++VFVG+SL+ MY++C +
Sbjct: 784 FSNVFVGSSLIDMYMRCGK 802
>ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 98.2 bits (243), Expect(2) = 4e-32
Identities = 46/68 (67%), Positives = 52/68 (76%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
GR +FS M S+ FLPNEF+VCSVLKACG ER +K GRQLH I+KK+ NDVFVGTS
Sbjct: 269 GREAISMFSNMLSDEFLPNEFSVCSVLKACGEERELKIGRQLHGLIIKKIIKNDVFVGTS 328
Query: 37 LVSMYVKC 14
LV MY KC
Sbjct: 329 LVDMYAKC 336
Score = 65.1 bits (157), Expect(2) = 4e-32
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
I++FYAQC D+SS+F AF M RDVV WTSMIT+C+Q G G EA
Sbjct: 228 IIYFYAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREA 272
Score = 50.4 bits (119), Expect(2) = 4e-12
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G LF M+ + N T+ S+L+ACG GR++H IVK F ++ +G++
Sbjct: 370 GEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGST 429
Query: 37 LVSMYVKC 14
LV Y KC
Sbjct: 430 LVWFYCKC 437
Score = 45.4 bits (106), Expect(2) = 4e-12
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
+V YA+CG+L+ S F+ M R+ V+WTS+I A+ G GEEA
Sbjct: 329 LVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGEEA 373
Score = 49.3 bits (116), Expect(2) = 2e-11
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = -3
Query: 187 MQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTSLVSMYVKC 14
M EG PN FT S LKAC + G+ +H + K ++VFVG++L+ MY KC
Sbjct: 481 MIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHSSANKTSALSNVFVGSALIYMYAKC 538
Score = 43.9 bits (102), Expect(2) = 2e-11
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
+V+FY +C + + +M RDVVSWT++I+ CA GH EA
Sbjct: 430 LVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAHLGHESEA 474
>ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein
[Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative,
expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa
Japonica Group]
Length = 616
Score = 100 bits (249), Expect(2) = 5e-32
Identities = 42/70 (60%), Positives = 57/70 (81%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G + +FSEM SEGF PNEFTVCSVLKAC E+ ++FG+QLHCA++KKM+ ND+ +G++
Sbjct: 262 GGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSA 321
Query: 37 LVSMYVKCSE 8
LV+MY +C E
Sbjct: 322 LVTMYARCGE 331
Score = 62.4 bits (150), Expect(2) = 5e-32
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEA 207
I FYAQCGD++S+ F+ M RDV+SWT+MITA QHGHG +A
Sbjct: 221 IAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHGHGGQA 265
Score = 51.6 bits (122), Expect(2) = 3e-14
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = -3
Query: 217 GRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMFNNDVFVGTS 38
G + LLF +M+ N T+ +L ACG ++ G++LH I+K ++ +G++
Sbjct: 363 GEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGST 422
Query: 37 LVSMYVKCSE 8
LV Y KC E
Sbjct: 423 LVWFYCKCGE 432
Score = 51.2 bits (121), Expect(2) = 3e-14
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = -2
Query: 341 IVFFYAQCGDLSSSFRAFNMMGERDVVSWTSMITACAQHGHGEEAFFV 198
+V YA+CG++ + F+MM R+ ++WTSMI+ AQ GHGE+A +
Sbjct: 322 LVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILL 369
Score = 54.3 bits (129), Expect = 1e-05
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = -3
Query: 244 SQLVHNMDTGRRLFLLFSEMQSEGFLPNEFTVCSVLKACGVERNIKFGRQLHCAIVKKMF 65
+ L HN++ + L +M +G PN +T S LKAC +++GR++H + K
Sbjct: 459 NNLGHNVEALKSL----DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQD 514
Query: 64 NNDVFVGTSLVSMYVKCSE 8
++VFVG+SL+ MY++C +
Sbjct: 515 FSNVFVGSSLIDMYMRCGK 533