BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026201
         (1145 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containi...   376   e-102
ref|XP_002525536.1| pentatricopeptide repeat-containing protein,...   308   2e-81
ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea ma...   301   2e-79
ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|2...   300   3e-79
ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containi...   295   1e-77

>ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Vitis vinifera]
          Length = 582

 Score =  376 bits (965), Expect = e-102
 Identities = 183/361 (50%), Positives = 256/361 (70%)
 Frame = -1

Query: 1085 VQETVLLVKKDENGMEFELDRMGLVLNIGLVSDVFKGLNTEGVSGLRFFNWVREKQVSFY 906
            + E + +++ DE  ME +L+ M L L++  V+++F+ LN E +S +RFF W+   +    
Sbjct: 206  ISEIIKVIRSDEIDMEVKLNLMNLRLSVASVTEIFRVLNLERLSAMRFFEWISHSRSGLS 265

Query: 905  RNSDFCSLIIDNIGRMEDYDLMFLLLREFSEEKLCLTEKAFAFIPVCSSNYDLSRGYVIR 726
            RN D CSLIIDN GR+ DY+ M  LL++F+ +++CLT KAF F+PV + +      +V +
Sbjct: 266  RNYDICSLIIDNCGRLGDYETMRCLLKDFNSKRVCLTSKAFGFVPVFTLSKASIMDFVRK 325

Query: 725  IIEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSF 546
            +IE+L+ VGG CR SG+FGLI+M     +F++  FVME T R+TSYYN+L+   CR C+F
Sbjct: 326  LIEVLDDVGGVCRRSGLFGLIEMFSVSGSFEMAKFVMEITERKTSYYNILVREMCRKCNF 385

Query: 545  QDAYVLFDEMRRFGCDPNANSYNYLLGSLCKNSRTVEACKLFGKMEEFGYVPDEVTFEVI 366
            ++A  L DEMR FGC PNA +YNYLL SLCKN+R  EAC +  +M+E G  PD +TFE+ 
Sbjct: 386  KEARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDALTFEIF 445

Query: 365  ICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYK 186
            I +  RLG+LDFA++FL+QM+SRG+EPR TTHAAFIKGYF+  R+ EAY+YVVD    YK
Sbjct: 446  IYYTYRLGKLDFAIKFLDQMVSRGLEPRLTTHAAFIKGYFHSRRYEEAYEYVVDSGVTYK 505

Query: 185  SSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 6
               N+ YSLLASL  ++  ++ A++IL++M+EKGLKPNF VY +VL+ L KSG   L  D
Sbjct: 506  WPSNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEHLDKSGREDLAGD 565

Query: 5    L 3
            L
Sbjct: 566  L 566


>ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535215|gb|EEF36894.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 430

 Score =  308 bits (789), Expect = 2e-81
 Identities = 159/355 (44%), Positives = 237/355 (66%)
 Frame = -1

Query: 1067 LVKKDENGMEFELDRMGLVLNIGLVSDVFKGLNTEGVSGLRFFNWVREKQVSFYRNSDFC 888
            L+  ++N +E +L+ +G+ L+IG V  VF+ LN E  S L+FF+W+R  Q     NSD C
Sbjct: 67   LLITEDNELETKLNSLGVRLSIGSVRWVFQVLNREKKSALQFFHWIRRWQPELEGNSDIC 126

Query: 887  SLIIDNIGRMEDYDLMFLLLREFSEEKLCLTEKAFAFIPVCSSNYDLSRGYVIRIIEMLN 708
            SL+IDN G ++DY  M  LL  FS ++L LT+KAF ++ + SS  +L +     ++++L 
Sbjct: 127  SLVIDNCGHLDDYKAMRCLLDGFSLQRLFLTKKAFEYLQLTSSKEELLKKATQNVVDILQ 186

Query: 707  KVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQDAYVL 528
            ++GG+   +G+  LI+M   L +FD+  FV+E+T R+ SYYNVLI   CR   F+ A  L
Sbjct: 187  EIGGTSYGTGVPSLIEMFSDLGSFDMAKFVIEKTGRKLSYYNVLIRELCRRGDFKAARDL 246

Query: 527  FDEMRRFGCDPNANSYNYLLGSLCKNSRTVEACKLFGKMEEFGYVPDEVTFEVIICHACR 348
             DE+ + GC+P+A++YNY++ SL KN +  +AC++F +M++    PD +TFE+ I ++C 
Sbjct: 247  MDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEMQDNDCPPDALTFEIFIYNSCN 306

Query: 347  LGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKSSGNVN 168
             G+LD A EF + M++RG+EPR  THAAFIKG+F   ++ +AYKYVV   DKY  S NVN
Sbjct: 307  EGKLDNAFEFFDDMVARGLEPRLLTHAAFIKGFFNSQQYEKAYKYVVGSDDKY--SSNVN 364

Query: 167  YSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVADL 3
            YSLLA+L  K   +V+A  IL +M++KGL+P+F V++KV K L KSG   L   L
Sbjct: 365  YSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHLMKSGNEELATSL 419


>ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea mays]
            gi|223944699|gb|ACN26433.1| unknown [Zea mays]
            gi|414864420|tpg|DAA42977.1| TPA: hypothetical protein
            ZEAMMB73_690405 [Zea mays]
          Length = 430

 Score =  301 bits (771), Expect = 2e-79
 Identities = 165/362 (45%), Positives = 222/362 (61%), Gaps = 5/362 (1%)
 Frame = -1

Query: 1073 VLLVKKDENGMEFELDRM-GLVLNIGLVSDVFKGLNTEGVSGLRFFNWVREKQVSFYRNS 897
            V LV     G+E +LDR+   VL+ GLVS V + L   GV   RFF W       F    
Sbjct: 46   VCLVVAGGGGLEADLDRLFSAVLSHGLVSSVLRALTDRGVPAERFFAWASSLGRGFSPGP 105

Query: 896  DFCSLIIDNIGRMEDYDLMFLLLREFSEEKLCLTEKAFAFI-PVCSSNYDLSRGYVIR-I 723
               +L+++N GR++DY  M   L   SE +L LT++AFAF+ P   S+   S     R +
Sbjct: 106  RAYNLLVENAGRLDDYGAMSRALALMSERRLSLTDRAFAFLAPSSGSSRSGSVEDAARAV 165

Query: 722  IEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQ 543
            +  L+ VGG CR SG+F L+K L S+  FD  + V+EETAR+  YYNVL+ AKC++  F 
Sbjct: 166  LRALDGVGGPCRASGVFSLVKALASIGEFDAAVLVIEETARKVRYYNVLVAAKCKAGDFV 225

Query: 542  DAYVLFDEMRRFGCDPNANSYNYLLGSLCKNSRTVEACKLFGKMEEF--GYVPDEVTFEV 369
             A  +FDEMRR G DP+AN++NYLLG L K  R  EAC L   ME      +P  +T+E+
Sbjct: 226  GAREVFDEMRRSGSDPDANTWNYLLGCLLKKGRLAEACGLVEAMERLKRSEIPSSLTYEI 285

Query: 368  IICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKY 189
            +  HAC+ G++D A++ L+QM S  + PR T H+AFIKGYFY  R  +A KYV DM  + 
Sbjct: 286  LTYHACKAGKMDSAMQILDQMFSENLTPRITIHSAFIKGYFYAGRIEDACKYVSDMSTRD 345

Query: 188  KSSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVA 9
            + S N NYSLLA LL KS R ++A  +L ++MEKGL+P+   Y+KV KDLHK G G L  
Sbjct: 346  RHSVNRNYSLLAKLLWKSGRTIDAGRVLYELMEKGLRPDHSAYVKVAKDLHKMGKGNLAC 405

Query: 8    DL 3
            +L
Sbjct: 406  EL 407


>ref|XP_002325952.1| predicted protein [Populus trichocarpa] gi|222862827|gb|EEF00334.1|
            predicted protein [Populus trichocarpa]
          Length = 432

 Score =  300 bits (769), Expect = 3e-79
 Identities = 159/355 (44%), Positives = 226/355 (63%)
 Frame = -1

Query: 1067 LVKKDENGMEFELDRMGLVLNIGLVSDVFKGLNTEGVSGLRFFNWVREKQVSFYRNSDFC 888
            L+K+DE  +E++L  + + L+I  V+ VF  LN+E VS LRFF W+R  Q     NSD C
Sbjct: 68   LIKRDEYDLEYKLGSLSVKLSIASVTLVFHVLNSEKVSALRFFRWIRHWQPELRCNSDIC 127

Query: 887  SLIIDNIGRMEDYDLMFLLLREFSEEKLCLTEKAFAFIPVCSSNYDLSRGYVIRIIEMLN 708
            SL+IDN GR++DYD M  LL EF+E +LCLT+KAF F+ V +   +       R+I +L 
Sbjct: 128  SLVIDNCGRLDDYDAMRSLLNEFNENQLCLTKKAFEFLHVMNVTNESLVESTQRVIVLLL 187

Query: 707  KVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQDAYVL 528
            +V GSC    +  LI+M   L +FD+  FVM++T R+ SYY + I   CR C F+    +
Sbjct: 188  EVRGSCYG-WVSSLIEMFSVLGSFDMVEFVMKKTERKISYYYIFIREMCRRCDFKGVRDI 246

Query: 527  FDEMRRFGCDPNANSYNYLLGSLCKNSRTVEACKLFGKMEEFGYVPDEVTFEVIICHACR 348
             DEMR+ G + NA  YNYL+  L KN    +ACK+  +M++    PD +TFE+ I + C 
Sbjct: 247  QDEMRKEGFELNARIYNYLISCLLKNGEYADACKVLTEMQDKDCPPDALTFEIFIYYCCN 306

Query: 347  LGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKSSGNVN 168
             G+ + A  + +++++RG+EPR +THAAFIKG+F   ++ EAYKYVVD   KYK +  +N
Sbjct: 307  NGKTEIACHYFDEIVARGLEPRLSTHAAFIKGFFNSEQYEEAYKYVVDSDKKYKCTSCMN 366

Query: 167  YSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVADL 3
            YSLLA L  K   +V A+ IL +M++KGL+P F VY+KV   L+KSG   L  DL
Sbjct: 367  YSLLARLHQKRGNLVIAQNILSEMIKKGLRPYFKVYMKVFNCLNKSGRETLATDL 421


>ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
            gi|449498723|ref|XP_004160616.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
          Length = 494

 Score =  295 bits (755), Expect = 1e-77
 Identities = 149/363 (41%), Positives = 230/363 (63%)
 Frame = -1

Query: 1091 NSVQETVLLVKKDENGMEFELDRMGLVLNIGLVSDVFKGLNTEGVSGLRFFNWVREKQVS 912
            N +   + ++++++  +E +LD   + L   LV  + + LN   +S  RFFNWV  +   
Sbjct: 117  NQLSNIINIIRENQEDLESKLDSPNVRLTNVLVGQILEMLNKHKISASRFFNWVSVQSCK 176

Query: 911  FYRNSDFCSLIIDNIGRMEDYDLMFLLLREFSEEKLCLTEKAFAFIPVCSSNYDLSRGYV 732
            F  NSD  SL+IDN GR++DY+ +  +L EF  + + L  KAF F+   S+ + +    V
Sbjct: 177  FPCNSDVYSLLIDNFGRLDDYEGILPVLIEFGLKGIELNHKAFGFLLPLSNEHSMKLS-V 235

Query: 731  IRIIEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSC 552
            ++++++LN+ GG+CR SGI  LI+M CSL +F +  FV+E T +R+S+Y +++  KC+  
Sbjct: 236  VKLVKLLNEAGGTCRLSGIMALIEMFCSLGSFGMAKFVIEITEKRSSFYYIIVREKCKQK 295

Query: 551  SFQDAYVLFDEMRRFGCDPNANSYNYLLGSLCKNSRTVEACKLFGKMEEFGYVPDEVTFE 372
             F+ A    DEMR+ GC P+A   NYLL SLCKN +  EA  L  +M E    P+ +TFE
Sbjct: 296  DFEGARCTLDEMRQVGCIPDAGILNYLLSSLCKNDKFGEAHNLLEEMLEQNCSPNSLTFE 355

Query: 371  VIICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDK 192
            +IICH C++G ++ A+ +L+ M++ G+ PR +THAAF+K YF   R+ EAY+Y VD   K
Sbjct: 356  IIICHLCKIGNIESALGYLDMMVAGGLMPRLSTHAAFVKSYFSSQRYEEAYQYAVDSSLK 415

Query: 191  YKSSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLV 12
            Y ++ N  YSLLA+L  K   +V+A++IL ++M+ GLKP+F VY ++LK L   G G L 
Sbjct: 416  YVTTQNATYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLLKKLQVQGRGDLA 475

Query: 11   ADL 3
             DL
Sbjct: 476  NDL 478