BLASTX nr result
ID: Coptis21_contig00026157
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00026157 (391 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi... 139 3e-31 ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi... 115 3e-24 ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containi... 113 2e-23 ref|XP_002524945.1| pentatricopeptide repeat-containing protein,... 112 4e-23 emb|CBI33742.3| unnamed protein product [Vitis vinifera] 106 2e-21 >ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Vitis vinifera] Length = 628 Score = 139 bits (349), Expect = 3e-31 Identities = 65/102 (63%), Positives = 81/102 (79%) Frame = +2 Query: 86 KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265 +LA +DKSK+I H+LQIHAV+ ++GLD HPILNFKLQRSY+ RLDYS LF NP Sbjct: 32 RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91 Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391 +VFFWT++IHG+ L GL+ AL+ Y+QML+ GVEPN FTFSS Sbjct: 92 SVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSS 133 Score = 55.8 bits (133), Expect = 3e-06 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = +2 Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316 +H+ I NG+ + + L YS L+ +R++FD D+ +V W S+I GY ++G Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337 Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385 +AL L+ M G+ P TF Sbjct: 338 SQEALQLFKSMCRMGLHPTNITF 360 Score = 54.3 bits (129), Expect = 1e-05 Identities = 25/62 (40%), Positives = 37/62 (59%) Frame = +2 Query: 206 YSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTF 385 Y+ H LD +R+LFD + + W +I GYT NG+ N+AL L+ +ML +PN+ T Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259 Query: 386 SS 391 S Sbjct: 260 LS 261 >ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] Length = 645 Score = 115 bits (289), Expect = 3e-24 Identities = 57/102 (55%), Positives = 75/102 (73%) Frame = +2 Query: 86 KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265 + A +DKSKS+ H+LQIHA +L+ GL +PILNFKLQRSY+ RLD S +F+ FD P Sbjct: 49 RFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEP 108 Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391 NVF ++++IH + + L++ A YSQMLS GVEPN FTFSS Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSS 150 >ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Glycine max] Length = 628 Score = 113 bits (282), Expect = 2e-23 Identities = 55/101 (54%), Positives = 70/101 (69%) Frame = +2 Query: 89 LAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPN 268 LA +D SKS HH+LQIHA +L+ GL HPILNFKLQRSY+ L +S LF NPN Sbjct: 26 LALLIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPN 85 Query: 269 VFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391 VF WT +I+ + L++ ALS YSQML++ ++PN FT SS Sbjct: 86 VFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSS 126 >ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 417 Score = 112 bits (279), Expect = 4e-23 Identities = 56/102 (54%), Positives = 74/102 (72%) Frame = +2 Query: 86 KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265 KLA +DKSKSI+++ QIHA + ++ L HPIL+FKLQRSYS L++S LF+ NP Sbjct: 36 KLAIIIDKSKSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNP 95 Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391 NVFF+TS+IH +T + L+ AL Y+QML+ V PN FTFSS Sbjct: 96 NVFFYTSIIHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSS 137 Score = 54.3 bits (129), Expect = 1e-05 Identities = 25/83 (30%), Positives = 44/83 (53%) Frame = +2 Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316 +H+ I NG++ + + L YS L+ +R++F+ +V W S++ GY +G Sbjct: 282 VHSYIQNNGIEINAHVGSALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGF 341 Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385 DAL L+++M G +P TF Sbjct: 342 SQDALQLFNEMCGLGYQPTDITF 364 >emb|CBI33742.3| unnamed protein product [Vitis vinifera] Length = 562 Score = 106 bits (265), Expect = 2e-21 Identities = 51/88 (57%), Positives = 64/88 (72%) Frame = +2 Query: 86 KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265 +LA +DKSK+I H+LQIHAV+ ++GLD HPILNFKLQRSY+ RLDYS LF NP Sbjct: 32 RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91 Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQM 349 +VFFWT++IHG+ L G A L+ M Sbjct: 92 SVFFWTAIIHGHALRGDVVSAQQLFDTM 119 Score = 55.8 bits (133), Expect = 3e-06 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = +2 Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316 +H+ I NG+ + + L YS L+ +R++FD D+ +V W S+I GY ++G Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 271 Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385 +AL L+ M G+ P TF Sbjct: 272 SQEALQLFKSMCRMGLHPTNITF 294 Score = 54.3 bits (129), Expect = 1e-05 Identities = 25/62 (40%), Positives = 37/62 (59%) Frame = +2 Query: 206 YSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTF 385 Y+ H LD +R+LFD + + W +I GYT NG+ N+AL L+ +ML +PN+ T Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193 Query: 386 SS 391 S Sbjct: 194 LS 195