BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026157
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi...   115   3e-24
ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23
ref|XP_002524945.1| pentatricopeptide repeat-containing protein,...   112   4e-23
emb|CBI33742.3| unnamed protein product [Vitis vinifera]              106   2e-21

>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  139 bits (349), Expect = 3e-31
 Identities = 65/102 (63%), Positives = 81/102 (79%)
 Frame = +2

Query: 86  KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265
           +LA  +DKSK+I H+LQIHAV+ ++GLD HPILNFKLQRSY+   RLDYS  LF    NP
Sbjct: 32  RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91

Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391
           +VFFWT++IHG+ L GL+  AL+ Y+QML+ GVEPN FTFSS
Sbjct: 92  SVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSS 133



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = +2

Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316
           +H+ I  NG+  +  +   L   YS    L+ +R++FD  D+ +V  W S+I GY ++G 
Sbjct: 278 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 337

Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385
             +AL L+  M   G+ P   TF
Sbjct: 338 SQEALQLFKSMCRMGLHPTNITF 360



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +2

Query: 206 YSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTF 385
           Y+ H  LD +R+LFD  +  +   W  +I GYT NG+ N+AL L+ +ML    +PN+ T 
Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 386 SS 391
            S
Sbjct: 260 LS 261


>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
           gi|449513125|ref|XP_004164238.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  115 bits (289), Expect = 3e-24
 Identities = 57/102 (55%), Positives = 75/102 (73%)
 Frame = +2

Query: 86  KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265
           + A  +DKSKS+ H+LQIHA +L+ GL  +PILNFKLQRSY+   RLD S  +F+ FD P
Sbjct: 49  RFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEP 108

Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391
           NVF ++++IH +  + L++ A   YSQMLS GVEPN FTFSS
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSS 150


>ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  113 bits (282), Expect = 2e-23
 Identities = 55/101 (54%), Positives = 70/101 (69%)
 Frame = +2

Query: 89  LAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPN 268
           LA  +D SKS HH+LQIHA +L+ GL  HPILNFKLQRSY+    L +S  LF    NPN
Sbjct: 26  LALLIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPN 85

Query: 269 VFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391
           VF WT +I+ +    L++ ALS YSQML++ ++PN FT SS
Sbjct: 86  VFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSS 126


>ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535780|gb|EEF37442.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 417

 Score =  112 bits (279), Expect = 4e-23
 Identities = 56/102 (54%), Positives = 74/102 (72%)
 Frame = +2

Query: 86  KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265
           KLA  +DKSKSI+++ QIHA + ++ L  HPIL+FKLQRSYS    L++S  LF+   NP
Sbjct: 36  KLAIIIDKSKSINNLHQIHAFLYRHNLHHHPILSFKLQRSYSSLGHLNHSLTLFNQTQNP 95

Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTFSS 391
           NVFF+TS+IH +T + L+  AL  Y+QML+  V PN FTFSS
Sbjct: 96  NVFFYTSIIHAHTFHKLHYQALLFYAQMLTQKVTPNAFTFSS 137



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/83 (30%), Positives = 44/83 (53%)
 Frame = +2

Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316
           +H+ I  NG++ +  +   L   YS    L+ +R++F+     +V  W S++ GY  +G 
Sbjct: 282 VHSYIQNNGIEINAHVGSALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGF 341

Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385
             DAL L+++M   G +P   TF
Sbjct: 342 SQDALQLFNEMCGLGYQPTDITF 364


>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/88 (57%), Positives = 64/88 (72%)
 Frame = +2

Query: 86  KLAFHLDKSKSIHHILQIHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNP 265
           +LA  +DKSK+I H+LQIHAV+ ++GLD HPILNFKLQRSY+   RLDYS  LF    NP
Sbjct: 32  RLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNP 91

Query: 266 NVFFWTSLIHGYTLNGLYNDALSLYSQM 349
           +VFFWT++IHG+ L G    A  L+  M
Sbjct: 92  SVFFWTAIIHGHALRGDVVSAQQLFDTM 119



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = +2

Query: 137 IHAVILKNGLDQHPILNFKLQRSYSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGL 316
           +H+ I  NG+  +  +   L   YS    L+ +R++FD  D+ +V  W S+I GY ++G 
Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 271

Query: 317 YNDALSLYSQMLSYGVEPNQFTF 385
             +AL L+  M   G+ P   TF
Sbjct: 272 SQEALQLFKSMCRMGLHPTNITF 294



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +2

Query: 206 YSFHNRLDYSRILFDAFDNPNVFFWTSLIHGYTLNGLYNDALSLYSQMLSYGVEPNQFTF 385
           Y+ H  LD +R+LFD  +  +   W  +I GYT NG+ N+AL L+ +ML    +PN+ T 
Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193

Query: 386 SS 391
            S
Sbjct: 194 LS 195