BLASTX nr result
ID: Coptis21_contig00026121
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00026121 (297 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group... 62 6e-08 emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group] 62 6e-08 emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera] 61 1e-07 emb|CAN79529.1| hypothetical protein VITISV_026262 [Vitis vinifera] 60 2e-07 gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja... 57 2e-06 >gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group] gi|108709048|gb|ABF96843.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 594 Score = 61.6 bits (148), Expect = 6e-08 Identities = 29/62 (46%), Positives = 39/62 (62%) Frame = -2 Query: 188 TSSTIWHQQLGHPSSPTLQFVLHKSHVPVSDTFHVNNFFCESCKFGKSTKLPFKDSFSHT 9 TSST+WH++LGHP + + H S +P S T NN C +C+ GK T+LPF S S T Sbjct: 478 TSSTLWHRRLGHPGPTAVTTLQHLSAIPRSKT---NNSLCHACQLGKHTRLPFNKSTSST 534 Query: 8 TS 3 +S Sbjct: 535 SS 536 >emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group] Length = 1455 Score = 61.6 bits (148), Expect = 6e-08 Identities = 29/62 (46%), Positives = 39/62 (62%) Frame = -2 Query: 188 TSSTIWHQQLGHPSSPTLQFVLHKSHVPVSDTFHVNNFFCESCKFGKSTKLPFKDSFSHT 9 TSST+WH++LGHP + + H S +P S T NN C +C+ GK T+LPF S S T Sbjct: 559 TSSTLWHRRLGHPGPTAVTTLQHLSAIPRSKT---NNSLCHACQLGKHTRLPFNKSTSST 615 Query: 8 TS 3 +S Sbjct: 616 SS 617 >emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera] Length = 1427 Score = 60.8 bits (146), Expect = 1e-07 Identities = 27/54 (50%), Positives = 35/54 (64%) Frame = -2 Query: 191 RTSSTIWHQQLGHPSSPTLQFVLHKSHVPVSDTFHVNNFFCESCKFGKSTKLPF 30 +TS WH +LGHPSS QF++ K ++ + T +NFFCESC KS KLPF Sbjct: 445 KTSLANWHHRLGHPSSRIFQFLIRKHNLQIYPTESFHNFFCESCLCNKSHKLPF 498 >emb|CAN79529.1| hypothetical protein VITISV_026262 [Vitis vinifera] Length = 752 Score = 60.1 bits (144), Expect = 2e-07 Identities = 26/54 (48%), Positives = 36/54 (66%) Frame = -2 Query: 191 RTSSTIWHQQLGHPSSPTLQFVLHKSHVPVSDTFHVNNFFCESCKFGKSTKLPF 30 +TS + WH +LGHPSS QF++ K ++P+ T ++FFCE C KS KLPF Sbjct: 246 KTSLSNWHHRLGHPSSRIFQFLIRKHNLPIYPTKSFHSFFCELCLCNKSHKLPF 299 >gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group] Length = 1250 Score = 57.0 bits (136), Expect = 2e-06 Identities = 28/61 (45%), Positives = 40/61 (65%) Frame = -2 Query: 185 SSTIWHQQLGHPSSPTLQFVLHKSHVPVSDTFHVNNFFCESCKFGKSTKLPFKDSFSHTT 6 SST+WH++LGHPSS +Q LHK + + +++ C +CK GK T+LPF S S T+ Sbjct: 487 SSTLWHRRLGHPSSAAIQ-TLHK--LAILPCTKIDHSLCHACKLGKHTRLPFSRSQSSTS 543 Query: 5 S 3 S Sbjct: 544 S 544