BLASTX nr result
ID: Coptis21_contig00026046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00026046
(1459 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH... 513 e-143
ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 d... 501 e-139
ref|XP_002329202.1| chromatin remodeling complex subunit [Populu... 500 e-139
ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis ... 462 e-127
ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin... 459 e-126
>ref|XP_003633446.1| PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera]
Length = 1704
Score = 513 bits (1320), Expect = e-143
Identities = 273/491 (55%), Positives = 334/491 (68%), Gaps = 5/491 (1%)
Frame = -2
Query: 1458 FRLRNVEDYSERIKLGHWPKVETDNIFLEFIDTSKVEDS-EKDDVVFSGNFDGPDDGVSG 1282
FRL N + RI+LGHWP V +I LEF++ E+ E D V+ SG FDGPD+GVSG
Sbjct: 98 FRLCNANQFVGRIRLGHWPVVAASSISLEFVEKRVSEEGIETDSVILSGIFDGPDEGVSG 157
Query: 1281 LAHLVSQXXXXXXXXXXXXXXEDALILTMRVEILRSSFDACDSLLDVIRQPWKRSMVGVM 1102
L HL E + +RVEILR++FDAC+SLLD R WK+SM+ VM
Sbjct: 158 LVHLSRLKLLTLRPVLGVTFSEGVSFVRLRVEILRTAFDACESLLDNSRPLWKKSMMSVM 217
Query: 1101 AWLRPEVTTQEGIYGIDRSNFVDLDSQIDTDDDHIESRRKMRFNAADFYDAIKPPKDAXX 922
AWLRPEVTT E YG+ +S +D+DS + D ++S++ F+AA FY+AIKP K+
Sbjct: 218 AWLRPEVTTSEARYGVAKSKEMDIDSNMGMDVGDLDSKKHQNFDAAGFYEAIKPSKEDPL 277
Query: 921 XXXXXXXXXXXXXPYQRRAAYWMVERE---KGTSLKSSERDQNQFLRPLCVPVNFLYTEL 751
PYQRRAAYWMV+RE +G SL S PLC+PV+F+ +
Sbjct: 278 LDYDMPDLLPELRPYQRRAAYWMVQREIKGEGGSLFS----------PLCMPVDFVDSFE 327
Query: 750 LMFYNPFSGSISLRPESISSYVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEVL 571
MFYNPFSG++SLRPE S V GG+LADEMGLGKTVELLACIFAHRK SE
Sbjct: 328 RMFYNPFSGNVSLRPEYSSLNVYGGILADEMGLGKTVELLACIFAHRKPASESGILLNNA 387
Query: 570 TQAAEGQKSNLKRLKIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKSS 391
QAA+GQK NLKRLK + VEC CGA++ES +YKGLWVQCD+CDAWQHADCVGYSP K++
Sbjct: 388 LQAAQGQKINLKRLKRDHVECICGAVSESPRYKGLWVQCDVCDAWQHADCVGYSPTAKTT 447
Query: 390 SSPKVSKEGGCKKVQSGNCRK-SSKRKASNIVEMEGYYICQLCSELIQVSHSPVHTGATL 214
S + S KK N +K + K+ +NIV M+G +ICQLC ELIQ + SP TGATL
Sbjct: 448 KSKENSNGQVFKKNPLENSKKQTGKKNKTNIVLMDGEHICQLCLELIQATDSPAATGATL 507
Query: 213 IVCPSPILHQWHAEILRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDV 34
IVCP+PIL QWHAEI+RHT PGSLK VYEG+R+ SLS ++DIS+ +SADIVLTTYDV
Sbjct: 508 IVCPAPILPQWHAEIIRHTNPGSLKLCVYEGVRNTSLSNAYAMDISKLISADIVLTTYDV 567
Query: 33 LREDLSHDSDR 1
L+EDLSHDSDR
Sbjct: 568 LKEDLSHDSDR 578
>ref|NP_181609.4| RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing
protein [Arabidopsis thaliana]
gi|330254782|gb|AEC09876.1| RING-finger, DEAD-like
helicase, PHD and SNF2 domain-containing protein
[Arabidopsis thaliana]
Length = 1664
Score = 501 bits (1290), Expect = e-139
Identities = 261/492 (53%), Positives = 337/492 (68%), Gaps = 6/492 (1%)
Frame = -2
Query: 1458 FRLRNVEDYSERIKLGHWPKVETDNIFLEFIDTSKVEDSEKDDVVFSGNFDGPDDGVSGL 1279
FRL NV ++ +RIKLGHWP + + +I LE +D +KV D E V++S +FDGP +GVSGL
Sbjct: 103 FRLCNVTNFVDRIKLGHWPVLSSSDITLELVD-NKVSDDEVGSVIWSASFDGPGEGVSGL 161
Query: 1278 AHLVSQXXXXXXXXXXXXXXEDALILTMRVEILRSSFDACDSLLDVIRQPWKRSMVGVMA 1099
AHL S E L +RVE+L+ +FDACDSLL+ RQ WK+SM+ VM+
Sbjct: 162 AHLAS---IKFLTLRLMPGNEGLLSPRVRVEMLQQAFDACDSLLENTRQIWKKSMIHVMS 218
Query: 1098 WLRPEVTTQEGIYGIDRSNFVDLDSQIDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXX 919
WLRPEV T E YG R N D++S + T+D+ ++S ++ F+AA FY+AIKP K
Sbjct: 219 WLRPEVMTSEARYGT-RFNVKDIESSVVTEDETLDSSKQSSFDAAAFYEAIKPSKTDAML 277
Query: 918 XXXXXXXXXXXXPYQRRAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFY 739
PYQRRAAYWMV+RE+G + +++ NQF+ PL + V FL + MF
Sbjct: 278 GDDIADLLPELRPYQRRAAYWMVQRERGDPITLGDKEDNQFISPLSISVGFLDSATKMFL 337
Query: 738 NPFSGSISLRPESISSYVSGGVLADEMGLGKTVELLACIFAHRK------SMSEGTTASE 577
NPFSG+ISL PE S + GG+LADEMGLGKTVELLACIF+HRK S+S G++ ++
Sbjct: 338 NPFSGNISLTPEYFSPRIQGGILADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSVTD 397
Query: 576 VLTQAAEGQKSNLKRLKIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARK 397
VL + L+RLK ERVEC CGA++ESHKYKG+WVQCD+CDAWQHADCVGYSP K
Sbjct: 398 VLN-------AGLRRLKRERVECICGAVSESHKYKGVWVQCDLCDAWQHADCVGYSPKGK 450
Query: 396 SSSSPKVSKEGGCKKVQSGNCRKSSKRKASNIVEMEGYYICQLCSELIQVSHSPVHTGAT 217
+ + +K SK+ A+ I+ EG YICQ+CSEL+QV+ SP+ TGAT
Sbjct: 451 GKKDSQ--------HIDEKASQKKSKKDATEIIVREGEYICQMCSELLQVTASPISTGAT 502
Query: 216 LIVCPSPILHQWHAEILRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYD 37
LIVCP+PIL QWH+EI RHTR GSL T +YEG+R+ASLS P +DI+E ++ADIVLTTYD
Sbjct: 503 LIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTTYD 562
Query: 36 VLREDLSHDSDR 1
VL+EDL+HD DR
Sbjct: 563 VLKEDLTHDFDR 574
>ref|XP_002329202.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222870983|gb|EEF08114.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1320
Score = 500 bits (1287), Expect = e-139
Identities = 262/488 (53%), Positives = 329/488 (67%), Gaps = 2/488 (0%)
Frame = -2
Query: 1458 FRLRNV-EDYSERIKLGHWPKVETDNIFLEFIDTSKVE-DSEKDDVVFSGNFDGPDDGVS 1285
FR+ NV + RIKLGHWP + +I LE I+ S VE D E + V+FSG+FDGPD+G++
Sbjct: 103 FRVSNVKQSVLSRIKLGHWPVFSSSDISLELIEKSMVEEDREVESVIFSGSFDGPDEGIT 162
Query: 1284 GLAHLVSQXXXXXXXXXXXXXXEDALILTMRVEILRSSFDACDSLLDVIRQPWKRSMVGV 1105
GL HL + E L MRVEIL +FDAC+SLL+ RQ WK+SM+ V
Sbjct: 163 GLVHLTNMEFLTLRPVLGVDFSEKMTPLRMRVEILEKAFDACESLLESTRQIWKKSMMNV 222
Query: 1104 MAWLRPEVTTQEGIYGIDRSNFVDLDSQIDTDDDHIESRRKMRFNAADFYDAIKPPKDAX 925
MAWLRPEV T E Y +S ++++ + DD S ++ +F+ A Y+AIKP K
Sbjct: 223 MAWLRPEVMTSEARYRHAKSTEMEVNMAAEIGDDTSNSGKRAQFDVAGLYEAIKPSKSDP 282
Query: 924 XXXXXXXXXXXXXXPYQRRAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLM 745
PYQRRAA+WMV++EKG S SS ++++QF PLC+PV+FL T M
Sbjct: 283 MLEDDLPDLLPTLRPYQRRAAHWMVQQEKGES--SSVKERSQFFSPLCMPVDFLDTCSKM 340
Query: 744 FYNPFSGSISLRPESISSYVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEVLTQ 565
FYNPFSG++S PE YVSGG+LADEMGLGKTVELLACI AHRKS S+ + Q
Sbjct: 341 FYNPFSGNVSFHPEFSPPYVSGGILADEMGLGKTVELLACILAHRKSTSDDGSVVAPTWQ 400
Query: 564 AAEGQKSNLKRLKIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKSSSS 385
QK NLKRLK ERVEC CGA+++S+KY+GLWVQCDICDAWQHADCVGYSP
Sbjct: 401 NTGNQKINLKRLKRERVECVCGAVSDSYKYRGLWVQCDICDAWQHADCVGYSPR------ 454
Query: 384 PKVSKEGGCKKVQSGNCRKSSKRKASNIVEMEGYYICQLCSELIQVSHSPVHTGATLIVC 205
G KK+ + +K + + VE +G ++CQ+CSELI+V+ +P+ TGATLIVC
Sbjct: 455 -------GKKKMSVDDEQKHRNKTTISYVERDGEHVCQMCSELIEVADTPIATGATLIVC 507
Query: 204 PSPILHQWHAEILRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLRE 25
P+PIL QWH+EI RHTRPGSLKT+VYEG+R SLS T VDI + V+ADIVLTTYDVL+E
Sbjct: 508 PAPILPQWHSEITRHTRPGSLKTYVYEGVRDTSLSNTFVVDIGQLVNADIVLTTYDVLKE 567
Query: 24 DLSHDSDR 1
DL HDSDR
Sbjct: 568 DLLHDSDR 575
>ref|XP_002881739.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297327578|gb|EFH57998.1| SNF2 domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
Length = 1635
Score = 462 bits (1189), Expect = e-127
Identities = 245/486 (50%), Positives = 322/486 (66%)
Frame = -2
Query: 1458 FRLRNVEDYSERIKLGHWPKVETDNIFLEFIDTSKVEDSEKDDVVFSGNFDGPDDGVSGL 1279
FRL NV ++ +RIKLGHWP + + +I LE +D +KV D E V++S +FDGP +GVSGL
Sbjct: 103 FRLCNVTNFVDRIKLGHWPVLSSSDITLELVD-NKVSDDEAGSVIWSASFDGPGEGVSGL 161
Query: 1278 AHLVSQXXXXXXXXXXXXXXEDALILTMRVEILRSSFDACDSLLDVIRQPWKRSMVGVMA 1099
AHL S + L +RVE+L+ +FD+CDSLL+ RQ WK+SM+ VM+
Sbjct: 162 AHLAS---IKFLTLRLMPGNQGLLSPRVRVEMLQQAFDSCDSLLENTRQIWKKSMIHVMS 218
Query: 1098 WLRPEVTTQEGIYGIDRSNFVDLDSQIDTDDDHIESRRKMRFNAADFYDAIKPPKDAXXX 919
WLRPEV T E YG R N D++S + ++ + ++S ++ F+AA FY+AIKP K
Sbjct: 219 WLRPEVMTSEARYGT-RFNVKDIESSVASEAETLDSSKQSGFDAAAFYEAIKPSKTNTML 277
Query: 918 XXXXXXXXXXXXPYQRRAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMFY 739
PYQRRAAYWMV+RE+G + +++ NQF+ PL + V FL + MF+
Sbjct: 278 GDDITDLLPELRPYQRRAAYWMVQRERGDPITVGDKEDNQFISPLSISVGFLDSATKMFF 337
Query: 738 NPFSGSISLRPESISSYVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEVLTQAA 559
NPFS ADEMGLGKTVELLACIF+HRK + + S +
Sbjct: 338 NPFSTDA----------------ADEMGLGKTVELLACIFSHRKPAEDEISVSNG-SSFT 380
Query: 558 EGQKSNLKRLKIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKSSSSPK 379
+ + L+RLK ERVEC CGA++ES KYKG+WVQCD+CDAWQHADCVGYSP K + +
Sbjct: 381 DDLNAGLRRLKRERVECICGAVSESRKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKASQ 440
Query: 378 VSKEGGCKKVQSGNCRKSSKRKASNIVEMEGYYICQLCSELIQVSHSPVHTGATLIVCPS 199
E KV +K SK+ A+ I++ EG YICQ+CSEL+QV+ SP+ TGATLIVCP+
Sbjct: 441 HVDE----KVS----QKKSKKDATEIIDREGEYICQMCSELLQVTASPISTGATLIVCPA 492
Query: 198 PILHQWHAEILRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVLREDL 19
PIL QWH+EI RHTR GSL T +YEG+R+ASLS P +DI+E ++ADIVLTTYDVL+EDL
Sbjct: 493 PILPQWHSEITRHTRLGSLVTCIYEGVRNASLSEEPMIDITELLNADIVLTTYDVLKEDL 552
Query: 18 SHDSDR 1
+HD DR
Sbjct: 553 THDFDR 558
>ref|XP_004160739.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
SHPRH-like [Cucumis sativus]
Length = 1520
Score = 459 bits (1180), Expect = e-126
Identities = 240/490 (48%), Positives = 313/490 (63%), Gaps = 4/490 (0%)
Frame = -2
Query: 1458 FRLRNVE-DYSERIKLGHWPKVETDNIFLEFIDTSKVEDSEKDDVVFSGNFDGPDDGVSG 1282
FRL NV +RIK GHWP + +++ FLEFI+ ED + VV SGN DGPD+ +SG
Sbjct: 101 FRLCNVNGSLLDRIKFGHWPVLSSNDTFLEFIERDMEEDVKACSVVLSGNLDGPDEAISG 160
Query: 1281 LAHLVSQXXXXXXXXXXXXXXEDALILTMRVEILRSSFDACDSLLDVIRQPWKRSMVGVM 1102
L HL + ++ L +RVEIL S+FDAC+S+ D RQ WK+SM+ +
Sbjct: 161 LVHLANLKLMTLRPVDGVXFSQNMGSLRLRVEILSSAFDACESIFDNGRQLWKKSMMNTI 220
Query: 1101 AWLRPEVTTQEGIYGIDRSNFVDLDSQIDTDDDHIESRRKMRFNAADFYDAIKPPKDAXX 922
WLRPEV E YG+ +S+ +D + DD SR+ F+ FYDAIKP KD
Sbjct: 221 TWLRPEVVLSEVKYGVVKSSNMDTHLHHEAGDDTSNSRKHANFDTIGFYDAIKPSKDEPM 280
Query: 921 XXXXXXXXXXXXXPYQRRAAYWMVEREKGTSLKSSERDQNQFLRPLCVPVNFLYTELLMF 742
PYQRRAAYWM++REKG S S + Q + PLC+ + L T L +F
Sbjct: 281 LDEDIPNLLPKLRPYQRRAAYWMIQREKGFSGNSGLGENVQLISPLCMALKCLDTCLRVF 340
Query: 741 YNPFSGSISLRPESISSYVSGGVLADEMGLGKTVELLACIFAHRKSMSEGTTASEV-LTQ 565
YNPFSG+++L E + +V GG+LADEMGLGKT+ELLACI +H+ S+ EG +V + Q
Sbjct: 341 YNPFSGNLTLNAEQVLPHVYGGILADEMGLGKTIELLACILSHQMSVFEGRKGFDVEVQQ 400
Query: 564 AAEGQKSNLKRLKIERVECKCGAITESHKYKGLWVQCDICDAWQHADCVGYSPARKSSSS 385
E Q++ KRLK ER+EC CGA++E+++YKGLWVQCDICDAWQHADCVGYSP + S
Sbjct: 401 LVEDQRTEFKRLKRERIECLCGAVSENYRYKGLWVQCDICDAWQHADCVGYSPKGRIVKS 460
Query: 384 PKVSKEGGCKKVQSGNCR--KSSKRKASNIVEMEGYYICQLCSELIQVSHSPVHTGATLI 211
+ GN R K + R N++ ++C C EL+Q + SP+ TGATLI
Sbjct: 461 VDT---------EDGNSRREKRNNRNTLNVIVRAEEHVCTPCLELMQATDSPMATGATLI 511
Query: 210 VCPSPILHQWHAEILRHTRPGSLKTFVYEGLRSASLSTTPSVDISEFVSADIVLTTYDVL 31
VCP+PIL QW AEILRHT PGS+K VYEG+R SL T S I++ +++DIVLT+YDVL
Sbjct: 512 VCPAPILFQWQAEILRHTHPGSMKLLVYEGVRDTSLLGTLSAQINDLINSDIVLTSYDVL 571
Query: 30 REDLSHDSDR 1
+EDLSHDSDR
Sbjct: 572 KEDLSHDSDR 581