BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026037
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    78   8e-13
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    77   2e-12
gb|ABF59161.1| unknown protein [Arabidopsis thaliana]                  77   2e-12
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    77   2e-12

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 40/87 (45%), Positives = 61/87 (70%)
 Frame = -2

Query: 555 IYDAYYQETEWPNMVDILNSLNGQVVSGHQWIAQPATLIPIEILKFLWSQPDGKRDVYSV 376
           I D Y++  EWPNM++ILNSLNG    G +W+AQPA++ P  IL+ LW+ PD +R V S 
Sbjct: 614 IADVYFKIDEWPNMLNILNSLNGLEADGSRWVAQPASIFPPIILQALWNHPDERRHVISS 673

Query: 375 IQNLCQKVEEKPSGMSKVHDLAAQYYG 295
           +Q L +K+E  P   +++++LAA++ G
Sbjct: 674 MQCLLKKLEH-PMDTAELNNLAARFCG 699


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329267|gb|EFH59686.1| nucleic acid binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 78.2 bits (191), Expect = 8e-13
 Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -2

Query: 558 GIYDAYYQETEWPNMVDILNSLNGQVVSGHQWIAQPA-TLIPIEILKFLWSQPDGKRDVY 382
           G+ D  +  +EWPNM++ILNSLNG  + G + + +PA T+IP EIL+ LW  P  KR V 
Sbjct: 698 GVVDVLFDVSEWPNMLNILNSLNGMGIDGKKLVVRPATTVIPPEILRVLWKDPQEKRYVK 757

Query: 381 SVIQNLCQKVEEKPSGMSKVHDL 313
           SVIQNL +++E+ P   ++ H L
Sbjct: 758 SVIQNLVREIEQ-PLDATRCHTL 779


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332643237|gb|AEE76758.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = -2

Query: 558 GIYDAYYQETEWPNMVDILNSLNGQVVSGHQWIAQPA-TLIPIEILKFLWSQPDGKRDVY 382
           G+ D ++  +EWPNM+ ILNS+NG  + G + + +PA T+IP EIL+ LW  P  KR V 
Sbjct: 684 GVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVK 743

Query: 381 SVIQNLCQKVEEKPSGMSKVHDLAAQ 304
           SVIQNL +++E+ P   ++ H L  +
Sbjct: 744 SVIQNLVREIEQ-PLDATRCHTLITE 768


>gb|ABF59161.1| unknown protein [Arabidopsis thaliana]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = -2

Query: 558 GIYDAYYQETEWPNMVDILNSLNGQVVSGHQWIAQPA-TLIPIEILKFLWSQPDGKRDVY 382
           G+ D ++  +EWPNM+ ILNS+NG  + G + + +PA T+IP EIL+ LW  P  KR V 
Sbjct: 139 GVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVK 198

Query: 381 SVIQNLCQKVEEKPSGMSKVHDLAAQ 304
           SVIQNL +++E+ P   ++ H L  +
Sbjct: 199 SVIQNLVREIEQ-PLDATRCHTLITE 223


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|11994322|dbj|BAB02281.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = -2

Query: 558 GIYDAYYQETEWPNMVDILNSLNGQVVSGHQWIAQPA-TLIPIEILKFLWSQPDGKRDVY 382
           G+ D ++  +EWPNM+ ILNS+NG  + G + + +PA T+IP EIL+ LW  P  KR V 
Sbjct: 724 GVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRYVK 783

Query: 381 SVIQNLCQKVEEKPSGMSKVHDLAAQ 304
           SVIQNL +++E+ P   ++ H L  +
Sbjct: 784 SVIQNLVREIEQ-PLDATRCHTLITE 808