BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026026
         (365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   122   3e-26
emb|CBI22269.3| unnamed protein product [Vitis vinifera]              117   7e-25
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   117   7e-25
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23

>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  122 bits (306), Expect = 3e-26
 Identities = 58/95 (61%), Positives = 73/95 (76%)
 Frame = +2

Query: 71  KMSNAIGTPTCVSRKTILEEKIPTLHKCSNLNHVKQIQAQIFKFNLHQDPFIAPKLIAAF 250
           +MS     PT VS + + EEK+  LHKC++ NH+K++ AQI K NLH D ++APKLI+AF
Sbjct: 6   RMSLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAF 65

Query: 251 SLCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 355
           SLC+Q+NLAVNVF  IQ PNV LYNTLIRA+ QNS
Sbjct: 66  SLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100


>emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  117 bits (294), Expect = 7e-25
 Identities = 58/94 (61%), Positives = 72/94 (76%)
 Frame = +2

Query: 74  MSNAIGTPTCVSRKTILEEKIPTLHKCSNLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFS 253
           MS  I  PT VS++ +LE+KI  LH+CS+LN VKQI AQ+ K NLH++ F+  KLIAAFS
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 254 LCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 355
           LC Q+ LAVNVF  IQ P+V LYNTLIRA+ +NS
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94


>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  117 bits (294), Expect = 7e-25
 Identities = 58/94 (61%), Positives = 72/94 (76%)
 Frame = +2

Query: 74  MSNAIGTPTCVSRKTILEEKIPTLHKCSNLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFS 253
           MS  I  PT VS++ +LE+KI  LH+CS+LN VKQI AQ+ K NLH++ F+  KLIAAFS
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 254 LCNQLNLAVNVFYLIQKPNVFLYNTLIRAYTQNS 355
           LC Q+ LAVNVF  IQ P+V LYNTLIRA+ +NS
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94


>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  112 bits (280), Expect = 3e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)
 Frame = +2

Query: 95  PTCVSRKTILEEKIPTLHKCSNLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFSLCNQLNL 274
           PT  SR+ +LEEK+  LHKC+NL+ V QI AQ+ K NLHQD F+APKLIAAFSLC  L  
Sbjct: 12  PTWFSRRRLLEEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLAS 71

Query: 275 AVNVFYLIQKPNVFLYNTLIRAYTQNSLH 361
           AVNVF  +  PNV LYN++IRA+  NS H
Sbjct: 72  AVNVFNHVPHPNVHLYNSIIRAHAHNSSH 100


>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/89 (61%), Positives = 66/89 (74%)
 Frame = +2

Query: 95  PTCVSRKTILEEKIPTLHKCSNLNHVKQIQAQIFKFNLHQDPFIAPKLIAAFSLCNQLNL 274
           PT  SR+ +LEEK+  LHKCSNL+ V QI AQ+ K NLHQD F+APKLIAAFSLC  L  
Sbjct: 12  PTWFSRQRLLEEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLAS 71

Query: 275 AVNVFYLIQKPNVFLYNTLIRAYTQNSLH 361
           AVNVF  +  PNV LYN++IRA+  N+ H
Sbjct: 72  AVNVFNHVPHPNVHLYNSIIRAHAHNTSH 100