BLASTX nr result
ID: Coptis21_contig00026024
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00026024 (265 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002517309.1| ribosome biogenesis protein bms1, putative [... 61 1e-07 ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 ... 58 9e-07 ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 ... 58 9e-07 emb|CBI17233.3| unnamed protein product [Vitis vinifera] 58 9e-07 ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 ... 57 2e-06 >ref|XP_002517309.1| ribosome biogenesis protein bms1, putative [Ricinus communis] gi|223543572|gb|EEF45102.1| ribosome biogenesis protein bms1, putative [Ricinus communis] Length = 825 Score = 60.8 bits (146), Expect = 1e-07 Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 8/80 (10%) Frame = +3 Query: 48 MVMLTGDKEQSHKTHRTXXXXXXXXXXXXXXXXXXXXXX--------AFAYSSKNKAKRL 203 M M +G KEQSHK HR+ AFA++S KAKRL Sbjct: 1 MGMDSGSKEQSHKVHRSRQAGPKKQAKSDKKKKTDDNSTEEKKQNPKAFAFNSSVKAKRL 60 Query: 204 QSRATEKEQKRLHVPTIDRN 263 QSRA EKEQ+RLHVPTIDR+ Sbjct: 61 QSRAVEKEQRRLHVPTIDRS 80 >ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera] Length = 1139 Score = 57.8 bits (138), Expect = 9e-07 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = +3 Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263 AFA+SS KAKRLQSRATEKEQ+RLH+PTIDR+ Sbjct: 48 AFAFSSSVKAKRLQSRATEKEQRRLHIPTIDRS 80 >ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Length = 1181 Score = 57.8 bits (138), Expect = 9e-07 Identities = 27/33 (81%), Positives = 30/33 (90%) Frame = +3 Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263 AFA+SS NKAKRLQSRA EKEQ+RLHVP IDR+ Sbjct: 50 AFAFSSSNKAKRLQSRAVEKEQRRLHVPVIDRS 82 >emb|CBI17233.3| unnamed protein product [Vitis vinifera] Length = 1305 Score = 57.8 bits (138), Expect = 9e-07 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = +3 Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263 AFA+SS KAKRLQSRATEKEQ+RLH+PTIDR+ Sbjct: 48 AFAFSSSVKAKRLQSRATEKEQRRLHIPTIDRS 80 >ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Length = 1176 Score = 56.6 bits (135), Expect = 2e-06 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = +3 Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263 AFA++S NKAKRLQSRA EKEQ+RLHVP IDR+ Sbjct: 52 AFAFTSSNKAKRLQSRAVEKEQRRLHVPVIDRS 84