BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00026024
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517309.1| ribosome biogenesis protein bms1, putative [...    61   1e-07
ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 ...    58   9e-07
ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 ...    58   9e-07
emb|CBI17233.3| unnamed protein product [Vitis vinifera]               58   9e-07
ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 ...    57   2e-06

>ref|XP_002517309.1| ribosome biogenesis protein bms1, putative [Ricinus communis]
           gi|223543572|gb|EEF45102.1| ribosome biogenesis protein
           bms1, putative [Ricinus communis]
          Length = 825

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
 Frame = +3

Query: 48  MVMLTGDKEQSHKTHRTXXXXXXXXXXXXXXXXXXXXXX--------AFAYSSKNKAKRL 203
           M M +G KEQSHK HR+                              AFA++S  KAKRL
Sbjct: 1   MGMDSGSKEQSHKVHRSRQAGPKKQAKSDKKKKTDDNSTEEKKQNPKAFAFNSSVKAKRL 60

Query: 204 QSRATEKEQKRLHVPTIDRN 263
           QSRA EKEQ+RLHVPTIDR+
Sbjct: 61  QSRAVEKEQRRLHVPTIDRS 80


>ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis
           vinifera]
          Length = 1139

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = +3

Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263
           AFA+SS  KAKRLQSRATEKEQ+RLH+PTIDR+
Sbjct: 48  AFAFSSSVKAKRLQSRATEKEQRRLHIPTIDRS 80


>ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]
          Length = 1181

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +3

Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263
           AFA+SS NKAKRLQSRA EKEQ+RLHVP IDR+
Sbjct: 50  AFAFSSSNKAKRLQSRAVEKEQRRLHVPVIDRS 82


>emb|CBI17233.3| unnamed protein product [Vitis vinifera]
          Length = 1305

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = +3

Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263
           AFA+SS  KAKRLQSRATEKEQ+RLH+PTIDR+
Sbjct: 48  AFAFSSSVKAKRLQSRATEKEQRRLHIPTIDRS 80


>ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]
          Length = 1176

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +3

Query: 165 AFAYSSKNKAKRLQSRATEKEQKRLHVPTIDRN 263
           AFA++S NKAKRLQSRA EKEQ+RLHVP IDR+
Sbjct: 52  AFAFTSSNKAKRLQSRAVEKEQRRLHVPVIDRS 84