BLASTX nr result
ID: Coptis21_contig00026009
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00026009
(453 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containi... 196 2e-48
ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containi... 194 5e-48
ref|XP_003624391.1| Pentatricopeptide repeat-containing protein ... 188 3e-46
ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containi... 169 3e-40
ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [S... 143 1e-32
>ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 196 bits (498), Expect = 2e-48
Identities = 92/136 (67%), Positives = 112/136 (82%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSYTDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
VSWNA++AGYL +Y ++P+ W RMN + V PDNFTFAS+LTGLAA+S+ +LGLQVH QL
Sbjct: 384 VSWNAMMAGYLQLAYFELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQL 443
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
VK GYG++ CVGNSL DMY+K++KL DG KAF EM DV SWT+MA+GCLQCG P KAL
Sbjct: 444 VKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKAL 503
Query: 361 EVVEEMKNMGVRPNKF 408
EV+ EMKN+GVR NKF
Sbjct: 504 EVIYEMKNVGVRLNKF 519
Score = 69.7 bits (169), Expect = 2e-10
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Frame = +1
Query: 4 SWNAIIAGYLHYSYT-DVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
SW + AG L + M + GV + FT A+ L A ++ ++ G + H
Sbjct: 485 SWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLR 544
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
+K G + CV N+L+DMY K + F M R V+SWT M G G K+AL
Sbjct: 545 IKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEAL 604
Query: 361 EVVEEMKNMGVRPN 402
++ +EM+ PN
Sbjct: 605 QIFDEMRKGEAEPN 618
Score = 63.9 bits (154), Expect = 1e-08
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 VSWNAIIAGYL-HYSYTDVPRIWCRMNHQG-VVPDNFTFASVLTGLAAVSDLKLGLQVHA 174
VSW+AIIAG++ H + ++ RM+ G ++P+ FT S L + L Q++A
Sbjct: 282 VSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYA 341
Query: 175 QLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQ 336
+V+ GYG + N+ + ++ +KL + L+ F +D +SW M +G LQ
Sbjct: 342 FIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQ 395
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 109 FASVLTGLAAVSDLKLGLQVHAQLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMP 288
+ S L SD + G +HA+ +K N +++ Y+K +L GL+ F EMP
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277
Query: 289 FRDVISWTEMASGCLQCGAPKKALEVVEEMKNMG-VRPNKF 408
R+V+SW+ + +G +Q G P +AL + M G + PN+F
Sbjct: 278 ERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEF 318
>ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 194 bits (494), Expect = 5e-48
Identities = 91/136 (66%), Positives = 112/136 (82%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSYTDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
VSWNA++AGYL +Y ++P+ W RMN + V PDNFTFAS+LTGLAA+S+ +LGLQVH QL
Sbjct: 384 VSWNAMMAGYLQLAYFELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQL 443
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
VK GYG++ CVGNSL DMY+K++KL DG KAF EM DV SWT+MA+GCLQCG P KAL
Sbjct: 444 VKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKAL 503
Query: 361 EVVEEMKNMGVRPNKF 408
+V+ EMKN+GVR NKF
Sbjct: 504 KVIYEMKNVGVRLNKF 519
Score = 70.5 bits (171), Expect = 1e-10
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Frame = +1
Query: 4 SWNAIIAGYLHYSYT-DVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
SW + AG L ++ M + GV + FT A+ L A ++ ++ G + H
Sbjct: 485 SWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLR 544
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
+K G + CV N+L+DMY K + F M R V+SWT M G G K+AL
Sbjct: 545 IKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEAL 604
Query: 361 EVVEEMKNMGVRPN 402
++ +EM+ PN
Sbjct: 605 QIFDEMRKGEAEPN 618
Score = 63.9 bits (154), Expect = 1e-08
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 VSWNAIIAGYL-HYSYTDVPRIWCRMNHQG-VVPDNFTFASVLTGLAAVSDLKLGLQVHA 174
VSW+AIIAG++ H + ++ RM+ G ++P+ FT S L + L Q++A
Sbjct: 282 VSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYA 341
Query: 175 QLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQ 336
+V+ GYG + N+ + ++ +KL + L+ F +D +SW M +G LQ
Sbjct: 342 FIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQ 395
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 109 FASVLTGLAAVSDLKLGLQVHAQLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMP 288
+ S L SD + G +HA+ +K N +++ Y+K +L GL+ F EMP
Sbjct: 218 YVSFLQRCVLTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMP 277
Query: 289 FRDVISWTEMASGCLQCGAPKKALEVVEEMKNMG-VRPNKF 408
R+V+SW+ + +G +Q G P +AL + M G + PN+F
Sbjct: 278 ERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEF 318
>ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499406|gb|AES80609.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 709
Score = 188 bits (478), Expect = 3e-46
Identities = 85/136 (62%), Positives = 107/136 (78%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSYTDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
V+WN ++ GYL +S +P W MN +GV PD FTFAS LTGLA +S LK+G+QVHAQL
Sbjct: 174 VTWNTMMGGYLEFSSEQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHAQL 233
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
V+ GYGD+ CVGNSLVDMYLK++KL++G KAF E+P +DV SWT+MA GCLQ G P+ AL
Sbjct: 234 VRSGYGDDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMAL 293
Query: 361 EVVEEMKNMGVRPNKF 408
V+ +MK MGV+PNKF
Sbjct: 294 AVIAKMKKMGVKPNKF 309
Score = 87.0 bits (214), Expect = 1e-15
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Frame = +1
Query: 4 SWNAIIAGYLHYSYTDVP-RIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
SW + G L + + + +M GV P+ FT A+ L A ++ ++ G Q H
Sbjct: 275 SWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLR 334
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
+K G + CV N+L+DMY K +D F R V+SWT M C Q G P +AL
Sbjct: 335 IKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEAL 394
Query: 361 EVVEEMKNMGVRPN 402
++ +EMK V PN
Sbjct: 395 QIFDEMKETSVEPN 408
Score = 61.6 bits (148), Expect = 6e-08
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +1
Query: 109 FASVLTGLAAVSDLKLGLQVHAQLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMP 288
+ ++L A S+ G +HA +K + N L++MY+K K L L+ F EMP
Sbjct: 8 YINLLRSYAQDSNFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFDEMP 67
Query: 289 FRDVISWTEMASGCLQCGAPKKALEVVEEMKNMG-VRPNKF 408
R+V+SW+ + +GC+ G AL + M G V+PN+F
Sbjct: 68 ERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEF 108
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Frame = +1
Query: 1 VSWNAIIAGYLHYS-YTDVPRIWCRMNHQGVV-PDNFTFASVLTGLAAVSDLKLGLQVHA 174
VSW++++ G +H +D ++ M+ +G V P+ FTF S L + ++ Q+++
Sbjct: 72 VSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVTQAYQIYS 131
Query: 175 QLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKK 354
+V+ G + N+ + +++ KL + L+ F P RD ++W M G L+ + +
Sbjct: 132 LVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLEFSSEQI 191
Query: 355 ALEVVEEMKNMGVRPNKF 408
+ M GV+P++F
Sbjct: 192 PV-FWRYMNREGVKPDEF 208
>ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera] gi|296087996|emb|CBI35279.3| unnamed
protein product [Vitis vinifera]
Length = 598
Score = 169 bits (427), Expect = 3e-40
Identities = 79/136 (58%), Positives = 102/136 (75%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSYTDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
VSWNA++AG + + +VP W RM +GV PDNF F+ VL+GLAA+ D +G+QVH QL
Sbjct: 216 VSWNAVMAGLVQFCCGEVPGFWRRMCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQL 275
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
VK G+G E C+GNSLVDMYLK L++G+KAF EM RDV +W +MA+GCL CG P +AL
Sbjct: 276 VKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRAL 335
Query: 361 EVVEEMKNMGVRPNKF 408
E++EEM+ GVR NKF
Sbjct: 336 ELIEEMRRSGVRMNKF 351
Score = 86.7 bits (213), Expect = 2e-15
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +1
Query: 4 SWNAIIAGYLHYSYTD-VPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
+WN + AG L+ + M GV + FT A+ LT A ++ L+ G + H
Sbjct: 317 TWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLR 376
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
+K G + CV N+L+DMY K + D LK F + R V+SWT M G Q G +KAL
Sbjct: 377 IKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKAL 436
Query: 361 EVVEEMKNMGVRPN 402
E+ E+M+ G PN
Sbjct: 437 EIFEQMRAEGKAPN 450
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/104 (29%), Positives = 52/104 (50%)
Frame = +1
Query: 97 DNFTFASVLTGLAAVSDLKLGLQVHAQLVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAF 276
D +A++L A D + G +HA+L+K + + N +++MY K L K F
Sbjct: 34 DEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLF 93
Query: 277 SEMPFRDVISWTEMASGCLQCGAPKKALEVVEEMKNMGVRPNKF 408
P R+ +SW+ + +G +Q P AL + +M GV N+F
Sbjct: 94 DHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEF 137
>ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein
SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 143 bits (361), Expect = 1e-32
Identities = 70/136 (51%), Positives = 95/136 (69%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSYTDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQL 180
VSWN ++AG+ + +W RM + V D F+F++VL+GLAA + L GLQVHAQL
Sbjct: 211 VSWNTLLAGFARHWSVQGWILWRRMVREAVRADGFSFSTVLSGLAASTSLASGLQVHAQL 270
Query: 181 VKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKAL 360
VK G+GD+ VGNSLV+MY+KSK L DG AF+E+ +DV+SWT MA+GCL CG P KA+
Sbjct: 271 VKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAI 330
Query: 361 EVVEEMKNMGVRPNKF 408
++ +M GV PN +
Sbjct: 331 GILSQMMLDGVMPNSY 346
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = +1
Query: 1 VSWNAIIAGYLHYSY-TDVPRIWCRMNHQGVVPDNFTFASVLTGLAAVSDLKLGLQVHAQ 177
VSW + AG LH + I +M GV+P+++TFA+ A+++DL G +VH
Sbjct: 311 VSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGY 370
Query: 178 LVKYGYGDENCVGNSLVDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKA 357
++K G + V N+L+DMY K + K F M R VISWT M G G ++A
Sbjct: 371 VIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEA 430
Query: 358 LEVVEEMKNMGVRPNK 405
+EV ++M GV PN+
Sbjct: 431 VEVFDDMLLKGVAPNR 446
Score = 57.4 bits (137), Expect = 1e-06
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 76 NHQGVVP-DNFTFASVLTGLAAVSDLKLGLQVHAQLVKYGY-GDENCVGNSLVDMYLKSK 249
+HQ P ++ +A++L A +D +L +HA L+K G + N L+ Y K +
Sbjct: 32 HHQQQQPLPSYHYAALLQRSGATADPRLAAALHAALLKPGVLACHVFLHNHLLIAYFKCR 91
Query: 250 KLDDGLKAFSEMPFRDVISWTEMASGCLQCGAPKKALEVVEEMKNMGVRPNKF 408
GL+ EMP R+ +SW+ +G Q G P+ AL + M+ G PN+F
Sbjct: 92 LHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNEF 144