BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025641
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39579.3| unnamed protein product [Vitis vinifera]              112   3e-23
ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-23
ref|NP_172391.2| pentatricopeptide repeat-containing protein [Ar...   108   3e-22
ref|XP_002512497.1| pentatricopeptide repeat-containing protein,...   104   9e-21
ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20

>emb|CBI39579.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  112 bits (280), Expect = 3e-23
 Identities = 50/89 (56%), Positives = 67/89 (75%)
 Frame = -3

Query: 267 SICGKLHLMPYASLIFVHTQNPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQY 88
           S+CG L  M YA+L+F  TQNPN+L+FNSMIKGYS+ GPS+  L +++ MK R IWPD++
Sbjct: 49  SVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEF 108

Query: 87  TFAPLLKSCTNVTQVSFGRKVHGEIVRVG 1
           TFAPLLKSC+ +     G+ VHG ++ VG
Sbjct: 109 TFAPLLKSCSGICDNRIGKGVHGVVIVVG 137


>ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score =  112 bits (280), Expect = 3e-23
 Identities = 50/89 (56%), Positives = 67/89 (75%)
 Frame = -3

Query: 267 SICGKLHLMPYASLIFVHTQNPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQY 88
           S+CG L  M YA+L+F  TQNPN+L+FNSMIKGYS+ GPS+  L +++ MK R IWPD++
Sbjct: 49  SVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEF 108

Query: 87  TFAPLLKSCTNVTQVSFGRKVHGEIVRVG 1
           TFAPLLKSC+ +     G+ VHG ++ VG
Sbjct: 109 TFAPLLKSCSGICDNRIGKGVHGVVIVVG 137


>ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75099767|sp|O80488.1|PPR23_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g09190 gi|3249103|gb|AAC24086.1| Contains similarity
           to membrane-associated salt-inducible protein homolog
           TM021B04.10 gb|2191192 from A. thaliana BAC gb|AF007271
           [Arabidopsis thaliana] gi|28393182|gb|AAO42022.1|
           unknown protein [Arabidopsis thaliana]
           gi|332190289|gb|AEE28410.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 484

 Score =  108 bits (271), Expect = 3e-22
 Identities = 48/89 (53%), Positives = 65/89 (73%)
 Frame = -3

Query: 267 SICGKLHLMPYASLIFVHTQNPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQY 88
           SICG L    YA+ +F H QNPN+LVFN+MIK YS+ GP    L  ++ MK R IW D+Y
Sbjct: 44  SICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEY 103

Query: 87  TFAPLLKSCTNVTQVSFGRKVHGEIVRVG 1
           T+APLLKSC++++ + FG+ VHGE++R G
Sbjct: 104 TYAPLLKSCSSLSDLRFGKCVHGELIRTG 132


>ref|XP_002512497.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548458|gb|EEF49949.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 459

 Score =  104 bits (259), Expect = 9e-21
 Identities = 42/89 (47%), Positives = 66/89 (74%)
 Frame = -3

Query: 267 SICGKLHLMPYASLIFVHTQNPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQY 88
           S+CG  + MPYA+ +F+ + NPNIL FN+M+KGYS+ GP +  L  ++ MK R IWPD+Y
Sbjct: 207 SVCGSENKMPYANRVFLQSVNPNILPFNAMVKGYSLCGPFEESLSFFSSMKRRGIWPDEY 266

Query: 87  TFAPLLKSCTNVTQVSFGRKVHGEIVRVG 1
           TFAPLLK+C+++  +  G+ +H +++ +G
Sbjct: 267 TFAPLLKACSSLYDLKLGQCIHKDVIMIG 295


>ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  103 bits (256), Expect = 2e-20
 Identities = 45/89 (50%), Positives = 67/89 (75%)
 Frame = -3

Query: 267 SICGKLHLMPYASLIFVHTQNPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQY 88
           SICG L+ M YA+ IF  TQNP I++FN+MIKGYS++GP +   ++++ MK R IWPD+Y
Sbjct: 49  SICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEY 108

Query: 87  TFAPLLKSCTNVTQVSFGRKVHGEIVRVG 1
           T APLLK+C+++  +  G+ +H E++ VG
Sbjct: 109 TLAPLLKACSSLGVLQLGKCMHKEVLVVG 137