BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025327
         (1127 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containi...   350   4e-94
ref|XP_002518652.1| pentatricopeptide repeat-containing protein,...   335   2e-89
ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containi...   325   2e-86
ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containi...   325   2e-86
ref|XP_002870994.1| pentatricopeptide repeat-containing protein ...   303   4e-80

>ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
            [Vitis vinifera]
          Length = 811

 Score =  350 bits (898), Expect = 4e-94
 Identities = 170/253 (67%), Positives = 205/253 (81%)
 Frame = +1

Query: 367  GKYNDPNRGKPWASDRLSPQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDLDIL 546
            GK  D NRGKPW+  RLSP G  +LQTL++   N  +ID +L  L  QQ  ES+  ++ L
Sbjct: 67   GKSQDANRGKPWSHGRLSPPGQRILQTLIDPTFNLAQIDELLLELFEQQPGESDFSVESL 126

Query: 547  SVDLLGIVKGLGFYKKCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAAS 726
            S+D+LGIVKGLGFYKKC  A+ +F+W+RN ++SE LL G ++AV+I+ LGK  RVS AAS
Sbjct: 127  SLDVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAAS 186

Query: 727  LLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYG 906
            LL+ L  DGF VDVYAYTSMITAF +NGR+REAV+VF+KMEE GC+PTLITYNVILNVYG
Sbjct: 187  LLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYG 246

Query: 907  KMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDK 1086
            KMGMPWNK++ +VD M+S GI PDSYTYNTLISCCRRG+LYEEAA +  +MK AGF+PDK
Sbjct: 247  KMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDK 306

Query: 1087 VTYNALLDVYGKS 1125
            VTYNALLDVYGKS
Sbjct: 307  VTYNALLDVYGKS 319



 Score = 99.8 bits (247), Expect = 1e-18
 Identities = 45/148 (30%), Positives = 86/148 (58%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI+   ++  + DA  L N +   G   DV+ YT++++ F   G+ + AV +F +M  EG
Sbjct: 347  LISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEG 406

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
            C+P + T+N ++ ++G  G  + +++ V + +++    PD  T+NTL+S   +  +  E 
Sbjct: 407  CKPNICTFNALIKMHGNRG-KFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEV 465

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            + +F +MK AGF P++ T+N L+  Y +
Sbjct: 466  SGVFKEMKRAGFVPERDTFNTLISSYSR 493



 Score = 91.3 bits (225), Expect = 4e-16
 Identities = 47/147 (31%), Positives = 85/147 (57%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI+   + N   +AA +L  +   GFS D   Y +++  +  + R +EA+ V ++ME  G
Sbjct: 277  LISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNG 336

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
            C P+++TYN +++ Y + G+     L + + M  +GI PD +TY TL+S   +    + A
Sbjct: 337  CPPSIVTYNSLISAYARDGL-LEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAA 395

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYG 1119
             +IF +M++ G  P+  T+NAL+ ++G
Sbjct: 396  VQIFEEMRNEGCKPNICTFNALIKMHG 422



 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 47/177 (26%), Positives = 87/177 (49%)
 Frame = +1

Query: 592  KCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVY 771
            KC L M+  +     R   F      +  +++  G+   V+ A  +L+C+   GF+  + 
Sbjct: 598  KCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLT 657

Query: 772  AYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDG 951
             Y S++  ++ +  F  +  + R++  +G +P +I+YN ++  Y + G        V+  
Sbjct: 658  TYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGR-MRDASRVLSE 716

Query: 952  MRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            MR  G  PD  TYNT I+     S++ EA ++   M   G  P++ TYN+++D Y K
Sbjct: 717  MRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCK 773



 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 43/149 (28%), Positives = 80/149 (53%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   GK  R  +A  +L  +  +G    +  Y S+I+A+A +G   +A+ +  +M E+G
Sbjct: 312  LLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKG 371

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
             +P + TY  +L+ + K G      + + + MR++G  P+  T+N LI        + E 
Sbjct: 372  IKPDVFTYTTLLSGFEKAGKD-KAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEM 430

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             ++F  +K+   +PD VT+N LL V+G++
Sbjct: 431  MKVFEDIKTFQCSPDIVTWNTLLSVFGQN 459



 Score = 80.9 bits (198), Expect = 5e-13
 Identities = 45/133 (33%), Positives = 68/133 (51%)
 Frame = +1

Query: 727  LLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYG 906
            L++ + + G + D Y Y ++I+       + EA  V ++M+  G  P  +TYN +L+VYG
Sbjct: 258  LVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYG 317

Query: 907  KMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDK 1086
            K      + + V+  M   G  P   TYN+LIS   R  L E+A E+  QM   G  PD 
Sbjct: 318  KSRRS-KEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDV 376

Query: 1087 VTYNALLDVYGKS 1125
             TY  LL  + K+
Sbjct: 377  FTYTTLLSGFEKA 389



 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 53/232 (22%), Positives = 109/232 (46%)
 Frame = +1

Query: 421  PQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVKGLGFYKKCQ 600
            P   +   +L+++   D  ++  L+  +  Q  E  +  D+ +   L  + G     K +
Sbjct: 338  PPSIVTYNSLISAYARDGLLEDALE--LKNQMVEKGIKPDVFTYTTL--LSGFEKAGKDK 393

Query: 601  LAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVYAYT 780
             A+ IF+ MRN      +        LI   G   + ++   +   +     S D+  + 
Sbjct: 394  AAVQIFEEMRNEGCKPNIC---TFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWN 450

Query: 781  SMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDGMRS 960
            ++++ F  NG   E   VF++M+  G  P   T+N +++ Y + G  +++ +AV   M  
Sbjct: 451  TLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGS-FDQAMAVYKRMLE 509

Query: 961  QGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVY 1116
             G+ PD  +YN +++   RG L++++ ++  +MK     P+++TY +LL  Y
Sbjct: 510  AGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAY 561


>ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223542033|gb|EEF43577.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 827

 Score =  335 bits (858), Expect = 2e-89
 Identities = 174/311 (55%), Positives = 219/311 (70%), Gaps = 7/311 (2%)
 Frame = +1

Query: 214  TSNTR--PLSPLVQNLLFENLKTPQNSKTPATNNNXXXXXXXXXXXXXXXXXXGKYNDPN 387
            +SNT   P +PL+QN+L  + K   +S      N                    K  DPN
Sbjct: 37   SSNTSSPPFTPLIQNMLINHHKIQPHSPKFINPN----------VSIRPRTRISKARDPN 86

Query: 388  RGKPWASDRLSPQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDL-----DILSV 552
            RGKPWAS RLS  G  VL +L++      ++D++L  L  +   + EL L     + LS+
Sbjct: 87   RGKPWASHRLSTLGQQVLDSLIDPCFEGSELDKVLSQLF-EYYHKEELSLSSGTWNSLSM 145

Query: 553  DLLGIVKGLGFYKKCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLL 732
            D+LGI+KGLGFYKKC +AM +F W+R   D E +L   VVAV+IT LGKE +VS A+S+L
Sbjct: 146  DVLGIIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSIL 205

Query: 733  NCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKM 912
            N L  DGF +DVYAYTS+ITA+A+NGR+R+AVLVF+KMEEEGC+PTLITYNVILNVYGKM
Sbjct: 206  NNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKM 265

Query: 913  GMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVT 1092
            GMPW+KI  +V GM+S G+ PD YTYNTLISCCRRGSLYEEAA++F +MK +GF+PDKVT
Sbjct: 266  GMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVT 325

Query: 1093 YNALLDVYGKS 1125
            +N LLDVYGKS
Sbjct: 326  FNTLLDVYGKS 336



 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 47/149 (31%), Positives = 80/149 (53%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   GK  R  +A  +L  +   GFS  +  Y S+I+A+A +G  REA+ +  +M E+G
Sbjct: 329  LLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKG 388

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
             +P + TY  +L+ + K GM     + +   MR+ G  P+  T+N LI        + E 
Sbjct: 389  IKPDVFTYTTLLSGFEKAGMD-EPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEM 447

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             ++F +++     PD VT+N LL V+G++
Sbjct: 448  MKVFEEIEICNCAPDIVTWNTLLAVFGQN 476



 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 41/119 (34%), Positives = 70/119 (58%)
 Frame = +1

Query: 751  GFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNK 930
            G   ++  + ++I    N GRF E + VF ++E   C P ++T+N +L V+G+ GM  ++
Sbjct: 423  GCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMD-SE 481

Query: 931  ILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALL 1107
            +  V   M+  G +P+  T+NTLIS   R   +++A  ++ +M  AG TPD  +YNA+L
Sbjct: 482  VSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVL 540



 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 40/149 (26%), Positives = 76/149 (51%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI   G   R ++   +   +     + D+  + +++  F  NG   E   VF++M+  G
Sbjct: 434  LIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 493

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
              P   T+N +++ Y + G  + + +AV   M   G+ PD  +YN +++   RG L+E++
Sbjct: 494  FVPERDTFNTLISAYSRCGS-FQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQS 552

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             ++F +MK     P+++TY +LL  Y  S
Sbjct: 553  EKVFAEMKDGRCKPNELTYCSLLHAYANS 581



 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 4/181 (2%)
 Frame = +1

Query: 592  KCQLAMDIFKWMRNHRDSEFLLKGP----VVAVLITTLGKENRVSDAASLLNCLHNDGFS 759
            KC L M+       H   E   KG      +  +I   G+   V+ A  +LN ++  GFS
Sbjct: 615  KCDLLMET-----EHAFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFS 669

Query: 760  VDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILA 939
              +  Y S++   + +  F  +  V +++  +G +P LI+YN ++  Y + G        
Sbjct: 670  PSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGR-MKDASR 728

Query: 940  VVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVYG 1119
            +   M++ G++PD  TYNT ++     SL+E+A  +   M   G   ++ TYN+++D Y 
Sbjct: 729  IFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYC 788

Query: 1120 K 1122
            K
Sbjct: 789  K 789


>ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like
            [Cucumis sativus]
          Length = 831

 Score =  325 bits (832), Expect = 2e-86
 Identities = 169/304 (55%), Positives = 213/304 (70%)
 Frame = +1

Query: 214  TSNTRPLSPLVQNLLFENLKTPQNSKTPATNNNXXXXXXXXXXXXXXXXXXGKYNDPNRG 393
            +S + PL+PL+Q+LL    + P +S  P                       G+ +DPNRG
Sbjct: 48   SSASSPLAPLLQDLLPH--QHPSSSTQP----------HLPKPTFRTRTRIGRSHDPNRG 95

Query: 394  KPWASDRLSPQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVK 573
            KPW+  RLS QG  +L +LLN   +   +D IL  L            D +S D+LGI+K
Sbjct: 96   KPWSHHRLSTQGQRILDSLLNPEFDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIK 155

Query: 574  GLGFYKKCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDG 753
            GL FYKK +LA+ +F ++RN  D   +L   VVAV+I+ LGKE R S AASLL+ L NDG
Sbjct: 156  GLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDG 215

Query: 754  FSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKI 933
              +D+YAYTS+ITA+A+NGR+REAV+VF+K+EEEGC+PTLITYNVILNVYGKMGMPW+KI
Sbjct: 216  VHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKI 275

Query: 934  LAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDV 1113
              +VD M+S G+ PD YTYNTLIS CRRGSLYEEAAE+F +MK+AGF+PDKVTYNALLDV
Sbjct: 276  AGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDV 335

Query: 1114 YGKS 1125
            YGKS
Sbjct: 336  YGKS 339



 Score = 90.1 bits (222), Expect = 9e-16
 Identities = 42/148 (28%), Positives = 84/148 (56%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI+   ++  + +A  L + +   G   DV+ YT++++ F   G+   A+ VF +M   G
Sbjct: 367  LISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG 426

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
            CQP + T+N ++ ++G  G  + +++ V + ++    +PD  T+NTL++   +  +  E 
Sbjct: 427  CQPNICTFNALIKMHGNRG-NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEV 485

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            + +F +MK AGF P++ T+N L+  Y +
Sbjct: 486  SGVFKEMKRAGFVPERDTFNTLISAYSR 513



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 45/149 (30%), Positives = 79/149 (53%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   GK  R  +A  +L  +   GF+  +  Y S+I+A+A +G   EA+ +  +M ++G
Sbjct: 332  LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
             +P + TY  +L+ + K G   +  + V + MR  G  P+  T+N LI        + E 
Sbjct: 392  IKPDVFTYTTLLSGFEKTGKD-DYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             ++F ++K     PD VT+N LL V+G++
Sbjct: 451  MKVFEEIKICECVPDIVTWNTLLAVFGQN 479



 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 34/118 (28%), Positives = 66/118 (55%)
 Frame = +1

Query: 763  DVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAV 942
            D+  + +++  F  NG   E   VF++M+  G  P   T+N +++ Y + G  +++ +A+
Sbjct: 465  DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGF-FDQAMAI 523

Query: 943  VDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVY 1116
               M   G+ PD  TYN +++   RG L+E++ ++  +MK     P+++TY +LL  Y
Sbjct: 524  YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score = 73.6 bits (179), Expect = 9e-11
 Identities = 48/226 (21%), Positives = 109/226 (48%)
 Frame = +1

Query: 445  TLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVKGLGFYKKCQLAMDIFKW 624
            +LL++  N  +++R+  + + ++ +   ++   + +  L +V     Y K  L  +  + 
Sbjct: 576  SLLHAYANGKEVERM--SALAEEIYSGIIEPQAVLLKTLVLV-----YSKSDLLTETERA 628

Query: 625  MRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFAN 804
                R+  F      +  +++  G+   VS    +LN + + GF+  +  Y S++  ++ 
Sbjct: 629  FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 805  NGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSY 984
               F ++  + R++  +G +P +I++N ++  Y + G    +   +   M+  G+ PD  
Sbjct: 689  TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR-MKEASRIFAEMKDFGLAPDVI 747

Query: 985  TYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            TYNT I+     S++ EA ++   M      P++ TYN+L+D + K
Sbjct: 748  TYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCK 793



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 37/149 (24%), Positives = 70/149 (46%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   G+    S+ + +   +   GF  +   + ++I+A++  G F +A+ ++R+M + G
Sbjct: 472  LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAG 531

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
              P L TYN +L    + G+ W +   V+  M+     P+  TY +L+     G   E  
Sbjct: 532  VTPDLSTYNAVLAALARGGL-WEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
            + +  ++ S    P  V    L+ VY KS
Sbjct: 591  SALAEEIYSGIIEPQAVLLKTLVLVYSKS 619


>ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like
            [Cucumis sativus]
          Length = 831

 Score =  325 bits (832), Expect = 2e-86
 Identities = 169/304 (55%), Positives = 213/304 (70%)
 Frame = +1

Query: 214  TSNTRPLSPLVQNLLFENLKTPQNSKTPATNNNXXXXXXXXXXXXXXXXXXGKYNDPNRG 393
            +S + PL+PL+Q+LL    + P +S  P                       G+ +DPNRG
Sbjct: 48   SSASSPLAPLLQDLLPH--QHPSSSTQP----------HLPKPTFRTRTRIGRSHDPNRG 95

Query: 394  KPWASDRLSPQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVK 573
            KPW+  RLS QG  +L +LLN   +   +D IL  L            D +S D+LGI+K
Sbjct: 96   KPWSHHRLSTQGQRILDSLLNPEFDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIK 155

Query: 574  GLGFYKKCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDG 753
            GL FYKK +LA+ +F ++RN  D   +L   VVAV+I+ LGKE R S AASLL+ L NDG
Sbjct: 156  GLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDG 215

Query: 754  FSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKI 933
              +D+YAYTS+ITA+A+NGR+REAV+VF+K+EEEGC+PTLITYNVILNVYGKMGMPW+KI
Sbjct: 216  VHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKI 275

Query: 934  LAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDV 1113
              +VD M+S G+ PD YTYNTLIS CRRGSLYEEAAE+F +MK+AGF+PDKVTYNALLDV
Sbjct: 276  AGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDV 335

Query: 1114 YGKS 1125
            YGKS
Sbjct: 336  YGKS 339



 Score = 90.1 bits (222), Expect = 9e-16
 Identities = 42/148 (28%), Positives = 84/148 (56%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI+   ++  + +A  L + +   G   DV+ YT++++ F   G+   A+ VF +M   G
Sbjct: 367  LISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG 426

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
            CQP + T+N ++ ++G  G  + +++ V + ++    +PD  T+NTL++   +  +  E 
Sbjct: 427  CQPNICTFNALIKMHGNRG-NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEV 485

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            + +F +MK AGF P++ T+N L+  Y +
Sbjct: 486  SGVFKEMKRAGFVPERDTFNTLISAYSR 513



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 45/149 (30%), Positives = 79/149 (53%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   GK  R  +A  +L  +   GF+  +  Y S+I+A+A +G   EA+ +  +M ++G
Sbjct: 332  LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
             +P + TY  +L+ + K G   +  + V + MR  G  P+  T+N LI        + E 
Sbjct: 392  IKPDVFTYTTLLSGFEKTGKD-DYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEM 450

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             ++F ++K     PD VT+N LL V+G++
Sbjct: 451  MKVFEEIKICECVPDIVTWNTLLAVFGQN 479



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 49/226 (21%), Positives = 110/226 (48%)
 Frame = +1

Query: 445  TLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVKGLGFYKKCQLAMDIFKW 624
            +LL++  N  +++R+  + + ++ +   ++   + +  L +V     Y K  L  +  + 
Sbjct: 576  SLLHAYANGKEVERM--SALAEEIYSGIIEPQAVLLKTLVLV-----YSKSDLLTETERA 628

Query: 625  MRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFAN 804
                R+  F      +  +++  G+   VS    +LN + + GF+  +  Y S++  ++ 
Sbjct: 629  FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 805  NGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSY 984
               F ++  + R++  +G +P +I++N ++  Y + G    +   +   M+  G+ PD  
Sbjct: 689  TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGR-MKEASRIFAEMKDFGLAPDVI 747

Query: 985  TYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            TYNT I+     S++ EA ++   M   G  P++ TYN+L+D + K
Sbjct: 748  TYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCK 793



 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 34/118 (28%), Positives = 66/118 (55%)
 Frame = +1

Query: 763  DVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAV 942
            D+  + +++  F  NG   E   VF++M+  G  P   T+N +++ Y + G  +++ +A+
Sbjct: 465  DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGF-FDQAMAI 523

Query: 943  VDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVY 1116
               M   G+ PD  TYN +++   RG L+E++ ++  +MK     P+++TY +LL  Y
Sbjct: 524  YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 37/149 (24%), Positives = 70/149 (46%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   G+    S+ + +   +   GF  +   + ++I+A++  G F +A+ ++R+M + G
Sbjct: 472  LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAG 531

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
              P L TYN +L    + G+ W +   V+  M+     P+  TY +L+     G   E  
Sbjct: 532  VTPDLSTYNAVLAALARGGL-WEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM 590

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
            + +  ++ S    P  V    L+ VY KS
Sbjct: 591  SALAEEIYSGIIEPQAVLLKTLVLVYSKS 619



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 35/124 (28%), Positives = 62/124 (50%)
 Frame = +1

Query: 751  GFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNK 930
            G   D+ ++ ++I A+  NGR +EA  +F +M++ G  P +ITYN  +  Y    M + +
Sbjct: 706  GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSM-FIE 764

Query: 931  ILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLD 1110
             + VV  M   G  P+  TYN+LI    + +  +EA+     +++   +  K     LL+
Sbjct: 765  AIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEERRLLE 824

Query: 1111 VYGK 1122
               K
Sbjct: 825  RLNK 828


>ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297316831|gb|EFH47253.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 819

 Score =  303 bits (777), Expect = 4e-80
 Identities = 162/306 (52%), Positives = 211/306 (68%), Gaps = 2/306 (0%)
 Frame = +1

Query: 214  TSNTRPLSPLVQNLLFEN-LKTPQNSKTPATNNNXXXXXXXXXXXXXXXXXXGKYNDPNR 390
            TS + P  P V+ LL +  L    NS+ P T+                    GK  DPN 
Sbjct: 36   TSLSSPPPPPVEPLLHDVFLHQNPNSRQPITSQTSRNRNRTRI---------GKSRDPNL 86

Query: 391  GKPWASDRLSPQGHIVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDL-DILSVDLLGI 567
            GKPW+   LSPQG  VL++L+  N +  ++D +L  L     FE   D  +  S +LL  
Sbjct: 87   GKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDALLSEL-----FEPFKDKPESTSSELLAF 141

Query: 568  VKGLGFYKKCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHN 747
            +KGLGF+KK  LA+  F W    +D + +L   V+A++I+ LGKE RVS AA+L N L  
Sbjct: 142  LKGLGFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQE 201

Query: 748  DGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWN 927
            DGFS+DVY+YTS+I+AFAN+GR+REAV VF+KMEEEGC+PTLITYNVILNV+GKMG PWN
Sbjct: 202  DGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWN 261

Query: 928  KILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALL 1107
            KI ++V+ M+S GI PD+YTYNTLI+CC+RGSL++EAA++F +MK+AGF+ DKVTYNALL
Sbjct: 262  KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALL 321

Query: 1108 DVYGKS 1125
            DVYGKS
Sbjct: 322  DVYGKS 327



 Score = 97.1 bits (240), Expect = 7e-18
 Identities = 43/148 (29%), Positives = 82/148 (55%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            LI+   ++  + +A  L N +   G   DV+ YT++++ F   G+   A+ +F +M   G
Sbjct: 355  LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG 414

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
            C+P + T+N  + +YG  G  +  ++ + D +   G+ PD  T+NTL++   +  +  E 
Sbjct: 415  CKPNICTFNAFIKMYGNRG-KFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            + +F +MK AGF P++ T+N L+  Y +
Sbjct: 474  SGVFKEMKRAGFVPERETFNTLISAYSR 501



 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 45/149 (30%), Positives = 82/149 (55%)
 Frame = +1

Query: 679  LITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFRKMEEEG 858
            L+   GK +R  +A  +LN +  +GFS  +  Y S+I+A+A +G   EA+ +  +M E+G
Sbjct: 320  LLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKG 379

Query: 859  CQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRGSLYEEA 1038
             +P + TY  +L+ + + G      + + + MR+ G  P+  T+N  I        + + 
Sbjct: 380  TKPDVFTYTTLLSGFERAGKV-ESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDM 438

Query: 1039 AEIFGQMKSAGFTPDKVTYNALLDVYGKS 1125
             +IF ++   G +PD VT+N LL V+G++
Sbjct: 439  MKIFDEINVCGLSPDIVTWNTLLAVFGQN 467



 Score = 83.2 bits (204), Expect = 1e-13
 Identities = 54/228 (23%), Positives = 107/228 (46%)
 Frame = +1

Query: 433  IVLQTLLNSNVNDIKIDRILDTLIGQQDFESELDLDILSVDLLGIVKGLGFYKKCQLAMD 612
            +   +L+++   D  +D  ++  +  Q  E     D+ +   L  + G     K + AM+
Sbjct: 350  VTYNSLISAYARDGMLDEAME--LKNQMAEKGTKPDVFTYTTL--LSGFERAGKVESAMN 405

Query: 613  IFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVYAYTSMIT 792
            IF+ MRN      +         I   G   +  D   + + ++  G S D+  + +++ 
Sbjct: 406  IFEEMRNAGCKPNIC---TFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 793  AFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIM 972
             F  NG   E   VF++M+  G  P   T+N +++ Y + G  + + + V   M   G+ 
Sbjct: 463  VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG-SFEQAMTVYRRMLDAGVT 521

Query: 973  PDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVY 1116
            PD  TYNT+++   RG ++E++ ++  +M+     P+++TY +LL  Y
Sbjct: 522  PDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569



 Score = 74.7 bits (182), Expect = 4e-11
 Identities = 44/177 (24%), Positives = 84/177 (47%)
 Frame = +1

Query: 592  KCQLAMDIFKWMRNHRDSEFLLKGPVVAVLITTLGKENRVSDAASLLNCLHNDGFSVDVY 771
            KC L  +  +     ++  F      +  +++  G+   V  A  +L+ +   GF+  + 
Sbjct: 606  KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMA 665

Query: 772  AYTSMITAFANNGRFREAVLVFRKMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDG 951
             Y S++   + +  F ++  + R++  +G +P +I+YN ++  Y +          +   
Sbjct: 666  TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR-NTRMRDASRIFSE 724

Query: 952  MRSQGIMPDSYTYNTLISCCRRGSLYEEAAEIFGQMKSAGFTPDKVTYNALLDVYGK 1122
            MR  GI+PD  TYNT I      S++EEA  +   M   G  P++ TYN+++D Y K
Sbjct: 725  MRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781



 Score = 73.6 bits (179), Expect = 9e-11
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%)
 Frame = +1

Query: 673  AVLITTL----GKENRVSDAASLLNCLHNDGFSVDVYAYTSMITAFANNGRFREAVLVFR 840
            AVL+ TL     K + + +A    + L   GFS D+    SM++ +       +A  V  
Sbjct: 594  AVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLD 653

Query: 841  KMEEEGCQPTLITYNVILNVYGKMGMPWNKILAVVDGMRSQGIMPDSYTYNTLISCCRRG 1020
             M+E G  P++ TYN ++ ++ +    + K   ++  + ++GI PD  +YNT+I    R 
Sbjct: 654  YMKERGFTPSMATYNSLMYMHSR-SADFGKSEEILREILAKGIKPDIISYNTVIYAYCRN 712

Query: 1021 SLYEEAAEIFGQMKSAGFTPDKVTYNALLDVY 1116
            +   +A+ IF +M+ +G  PD +TYN  +  Y
Sbjct: 713  TRMRDASRIFSEMRDSGIVPDVITYNTFIGSY 744