BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025192
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002892169.1| pentatricopeptide repeat-containing protein ...    69   4e-10
ref|NP_171855.1| pentatricopeptide repeat-containing protein [Ar...    68   7e-10
dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]            68   7e-10
ref|XP_002532772.1| pentatricopeptide repeat-containing protein,...    64   1e-08
ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containi...    63   2e-08

>ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338011|gb|EFH68428.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 662

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/57 (52%), Positives = 44/57 (77%)
 Frame = -3

Query: 172 FFTSPIPPPEWIEPLTDISDLIINTKDLKPSPWVTRIVTILLNSTSNTIESNLDEYC 2
           F +S +PPPEWIEP  D+SDL+ + ++L+PSPWV++I+ +L  S S  +ESNLD +C
Sbjct: 53  FNSSSLPPPEWIEPFNDVSDLVKSNRNLQPSPWVSQILNLLDGSAS--MESNLDGFC 107


>ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
           gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18
           [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 660

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
 Frame = -3

Query: 229 LRDGHPQNPLSQLSKPGIS--FFTSPIPPPEWIEPLTDISDLIINTKDLKPSPWVTRIVT 56
           L D    +PLS  S+  +   F +S +PPPEWIEP  D+SDL+ + ++L PSPWV++I+ 
Sbjct: 33  LSDDSKCSPLSS-SRTSVRWVFNSSSLPPPEWIEPFNDVSDLVKSNRNLLPSPWVSQILN 91

Query: 55  ILLNSTSNTIESNLDEYC 2
           +L  S S  +ESNLD +C
Sbjct: 92  LLDGSAS--MESNLDGFC 107


>dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
 Frame = -3

Query: 229 LRDGHPQNPLSQLSKPGIS--FFTSPIPPPEWIEPLTDISDLIINTKDLKPSPWVTRIVT 56
           L D    +PLS  S+  +   F +S +PPPEWIEP  D+SDL+ + ++L PSPWV++I+ 
Sbjct: 15  LSDDSKCSPLSS-SRTSVRWVFNSSSLPPPEWIEPFNDVSDLVKSNRNLLPSPWVSQILN 73

Query: 55  ILLNSTSNTIESNLDEYC 2
           +L  S S  +ESNLD +C
Sbjct: 74  LLDGSAS--MESNLDGFC 89


>ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527482|gb|EEF29611.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 647

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = -3

Query: 172 FFTSPIPPPEWIEPLTDISDLIINT-KDLKPSPWVTRIVTILLNSTSNTIESNLDEYC 2
           F ++ +PPPEWI+P  D+SD+   T +DLKPSPWV +I+ +L    S+ +ESNLD +C
Sbjct: 44  FTSNSLPPPEWIDPFVDLSDVASRTHQDLKPSPWVNQILALL--DGSSNMESNLDTFC 99


>ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 27/57 (47%), Positives = 40/57 (70%)
 Frame = -3

Query: 172 FFTSPIPPPEWIEPLTDISDLIINTKDLKPSPWVTRIVTILLNSTSNTIESNLDEYC 2
           F  + +PPPEWIEP  D+SD+I +++ L PSPWV +I+ +L    S+ +E NLD +C
Sbjct: 51  FTNTLLPPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLL--DGSSNMEHNLDSFC 105