BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025092
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517888.1| protein binding protein, putative [Ricinus c...    72   4e-11
ref|NP_194566.3| RING/U-box domain-containing protein [Arabidops...    71   1e-10
ref|NP_179657.2| RING/U-box domain-containing protein [Arabidops...    70   1e-10
gb|AAM15208.1| hypothetical protein [Arabidopsis thaliana] gi|20...    70   1e-10
ref|XP_002869508.1| zinc ion binding protein [Arabidopsis lyrata...    70   2e-10

>ref|XP_002517888.1| protein binding protein, putative [Ricinus communis]
           gi|223542870|gb|EEF44406.1| protein binding protein,
           putative [Ricinus communis]
          Length = 570

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = -2

Query: 181 LWPCFVFYLFQFVYAVRPLRETSQSWGDEWLFAKRDD-VVGPSAAWNITGTYRGTWNSQN 5
           LW  F F + + V  VRPL+E ++SWGDEWLF K+D+  +GP +AWNITGTYRG+W   +
Sbjct: 28  LW--FGFVVLRPVAGVRPLKERARSWGDEWLFVKKDENDLGPFSAWNITGTYRGSWKFLD 85

Query: 4   S 2
           S
Sbjct: 86  S 86


>ref|NP_194566.3| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|56236078|gb|AAV84495.1| At4g28370 [Arabidopsis
           thaliana] gi|332660075|gb|AEE85475.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
          Length = 562

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -2

Query: 187 LMLWPCFVFYLFQFVYAVRPLRETSQSWGDEWLFAKRDDV-VGPSAAWNITGTYRGTWNS 11
           ++LW      + Q    +RP+RE  +SW DEWLF ++ +  VGP +AWNITGTYRGTW  
Sbjct: 16  IILWLSIWLAISQQALGLRPIREKPRSWSDEWLFGRKQEAEVGPFSAWNITGTYRGTWKF 75

Query: 10  QNS 2
            NS
Sbjct: 76  LNS 78


>ref|NP_179657.2| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|42570835|ref|NP_973491.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
           gi|63147406|gb|AAY34176.1| At2g20650 [Arabidopsis
           thaliana] gi|330251958|gb|AEC07052.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
           gi|330251959|gb|AEC07053.1| RING/U-box domain-containing
           protein [Arabidopsis thaliana]
          Length = 559

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = -2

Query: 187 LMLWPCFVFYLFQFVYAVRPLRETSQSWGDEWLFAKRD-DVVGPSAAWNITGTYRGTW 17
           L +W    F + Q    +RP+RET++SWGDEWLF K++    GP +AWNITGTYRGTW
Sbjct: 17  LSIW----FAVLQQANGLRPIRETARSWGDEWLFGKKEKGGAGPFSAWNITGTYRGTW 70


>gb|AAM15208.1| hypothetical protein [Arabidopsis thaliana]
           gi|20198037|gb|AAD21704.2| hypothetical protein
           [Arabidopsis thaliana]
          Length = 515

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = -2

Query: 187 LMLWPCFVFYLFQFVYAVRPLRETSQSWGDEWLFAKRD-DVVGPSAAWNITGTYRGTW 17
           L +W    F + Q    +RP+RET++SWGDEWLF K++    GP +AWNITGTYRGTW
Sbjct: 17  LSIW----FAVLQQANGLRPIRETARSWGDEWLFGKKEKGGAGPFSAWNITGTYRGTW 70


>ref|XP_002869508.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297315344|gb|EFH45767.1| zinc ion binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -2

Query: 187 LMLWPCFVFYLFQFVYAVRPLRETSQSWGDEWLFAKRDDV-VGPSAAWNITGTYRGTWNS 11
           ++ W      + Q    +RP+RE ++SW DEWLF ++ +  VGP +AWNITGTYRGTW  
Sbjct: 15  VIFWLSIWLAISQQALGLRPIREKTRSWSDEWLFGRKQEAEVGPFSAWNITGTYRGTWKF 74

Query: 10  QNS 2
            NS
Sbjct: 75  LNS 77