BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025067
         (594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    85   1e-14
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    83   3e-14
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    73   4e-11
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    72   5e-11
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    72   5e-11

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
 Frame = +3

Query: 9   YFDDI-KASTQYCNRVIKQHVAIAAHLSKGYMHNSISDMEILRTWRVSMRPRPTLCLQQC 185
           YFD + K  +   N ++ + + ++  L      +S+ D ++ R + +  +       ++ 
Sbjct: 184 YFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCREI 243

Query: 186 IWLPPAHGQVKINVDGASKGNPGPSGYGLSFRDNEGNFMLVVGKALGIADNYWXXXXXXX 365
           IW+PP  G +KIN DG+  G+P     G+ FR ++  F     + +G A           
Sbjct: 244 IWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACM 303

Query: 366 XXXXXXXDRGWLNMWIESDSTAAVTAYR-NGSMPWKLKGRWECCLRRAQSI--FVSHIWR 536
                  +    N+WIE+DS   + A+  N  +PWK+  RW  CL   +SI    +H+ R
Sbjct: 304 FAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTHVNR 363

Query: 537 EGNLASDRVAKKASSMPI 590
           EGNL +D +AK    + +
Sbjct: 364 EGNLVADALAKNGQGLAL 381


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
 Frame = +3

Query: 30   STQYCNRVIKQHVAIAAHLSKGYMHNSISDMEILRTWRVSMRPRPTLCLQQCIWLPPAHG 209
            S Q     I   +A++ ++S G   +S  D  IL  + VS R R    +   +W  P+  
Sbjct: 964  SIQSAKARIHSLIAMSGNVSTGKCLHS--DSAILEEFSVSPRHRKYKDIILVLWKNPSPP 1021

Query: 210  QVKINVDGASKGNPGPSGYGLSFRDNEGNFMLVVGKALGIADNYWXXXXXXXXXXXXXXD 389
             +K+N DG+  G  G +  G  FRD+ G+F+      +G+A  +                
Sbjct: 1022 LLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCNIGLASVFHAETLAFILALEHAAH 1079

Query: 390  RGWLNMWIESDSTAAVTAYRNGSM-PWKLKGRWECCLRRAQSIFVSHIWREGNLASDRVA 566
             GW N+W+ESDST+A+  + N S+  W L+ RW    R    +  SHI  EGN  +D +A
Sbjct: 1080 HGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGIQVISSHILHEGNRCADNLA 1139


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
 Frame = +3

Query: 186 IWLPPAHGQVKINVDGASKGNPGPSGYGLSFRDNEGNFMLVVGKALGIADNYWXXXXXXX 365
           IW       +K N DGAS      S  G  FRD   NF+    K LG    Y        
Sbjct: 224 IWYNRNQRWIKFNTDGASTATS--SSCGGVFRDQNANFLSCFAKNLGGGSAYQPELAAIM 281

Query: 366 XXXXXXXDRGWLNMWIESDSTAAVTAYRNGSM-PWKLKGRWECC--LRRAQSIFVSHIWR 536
                   R W N+WIESDS   V A++  SM P +L+ RW  C  L    +  ++HI+R
Sbjct: 282 RVVEIAYQRNWRNIWIESDSALVVMAFKKMSMIPCRLRNRWINCRKLLCRMNFVITHIYR 341

Query: 537 EGNLASDRVAKK 572
           E N  +D++A K
Sbjct: 342 EDNRCADKLASK 353


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 72.4 bits (176), Expect = 5e-11
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
 Frame = +3

Query: 102 HNSISDMEILRTWRVSMRPRPTLCLQQCIWLPPAHGQVKINVDGASKGNPGPSGYGLSFR 281
           ++++ D ++ + + +  + +        IW PP    VKIN DG+S G       G+  R
Sbjct: 187 NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 246

Query: 282 DNEGNFMLVVGKALGIADNYWXXXXXXXXXXXXXXDRGWLNMWIESDSTAAVTAYRNG-S 458
           D+  +F+  +   +G A                  +   +++ +E+DS   V A+  G  
Sbjct: 247 DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 306

Query: 459 MPWKLKGRWECCLRRAQSIFVS--HIWREGNLASDRVAKKASSMPI 590
           +PW+++ RW+ C     SI  S  HI REGN+ +D +AK    + +
Sbjct: 307 VPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSL 352


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 72.4 bits (176), Expect = 5e-11
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 3/166 (1%)
 Frame = +3

Query: 102 HNSISDMEILRTWRVSMRPRPTLCLQQCIWLPPAHGQVKINVDGASKGNPGPSGYGLSFR 281
           ++++ D ++ + + +  + +        IW PP    VKIN DG+S G       G+  R
Sbjct: 24  NSAMQDYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIR 83

Query: 282 DNEGNFMLVVGKALGIADNYWXXXXXXXXXXXXXXDRGWLNMWIESDSTAAVTAYRNG-S 458
           D+  +F+  +   +G A                  +   +++ +E+DS   V A+  G  
Sbjct: 84  DSNHHFLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLG 143

Query: 459 MPWKLKGRWECCLRRAQSIFVS--HIWREGNLASDRVAKKASSMPI 590
           +PW+++ RW+ C     SI  S  HI REGN+ +D +AK    + +
Sbjct: 144 VPWQMRARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLSL 189