BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025044
         (239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_671862.1| pentatricopeptide repeat-containing protein [Ar...    97   1e-18
ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arab...    97   1e-18
gb|AAO72718.1| pentatricopeptide repeat-containing protein [Arab...    97   1e-18
ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ...    97   2e-18
ref|XP_002521729.1| pentatricopeptide repeat-containing protein,...    96   3e-18

>ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17525, mitochondrial; Flags: Precursor
           gi|330251547|gb|AEC06641.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 626

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +2

Query: 2   GNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAXXXXXXXXXXXXXPDVITITKVV 181
           G VG+ +SLMSEM EPN+VT+NILISAYC E  LIQ+             PDV+T+TKV+
Sbjct: 231 GKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTKVM 290

Query: 182 ELLCNKGRAKEAVEVLERV 238
           E+LCN+GR  EA+EVLERV
Sbjct: 291 EVLCNEGRVSEALEVLERV 309


>ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
           lyrata] gi|297329905|gb|EFH60324.1| hypothetical protein
           ARALYDRAFT_343373 [Arabidopsis lyrata subsp. lyrata]
          Length = 1056

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +2

Query: 2   GNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAXXXXXXXXXXXXXPDVITITKVV 181
           G VG+ +SLMSEM EPN+VT+NILISAYC E  LIQ+             PDV+T+TKV+
Sbjct: 219 GKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVPDVVTVTKVM 278

Query: 182 ELLCNKGRAKEAVEVLERV 238
           E+LCN+GR  EA+EVLERV
Sbjct: 279 EVLCNEGRVSEALEVLERV 297


>gb|AAO72718.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 532

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +2

Query: 2   GNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAXXXXXXXXXXXXXPDVITITKVV 181
           G VG+ +SLMSEM EPN+VT+NILISAYC E  LIQ+             PDV+T+TKV+
Sbjct: 130 GKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPDVVTVTKVM 189

Query: 182 ELLCNKGRAKEAVEVLERV 238
           E+LCN+GR  EA+EVLERV
Sbjct: 190 EVLCNEGRVSEALEVLERV 208


>ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513709|gb|AES95332.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/79 (59%), Positives = 58/79 (73%)
 Frame = +2

Query: 2   GNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAXXXXXXXXXXXXXPDVITITKVV 181
           G VG+ +SLM+EMV+PNEVT+NILIS+Y +E NL+QA             PDV+T+TKVV
Sbjct: 226 GKVGRARSLMNEMVDPNEVTFNILISSYYKEENLVQALVLLEKCFALSLVPDVVTVTKVV 285

Query: 182 ELLCNKGRAKEAVEVLERV 238
           E+LCN GR  EA EVLERV
Sbjct: 286 EILCNAGRVTEAAEVLERV 304


>ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539120|gb|EEF40716.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 629

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 45/79 (56%), Positives = 58/79 (73%)
 Frame = +2

Query: 2   GNVGKGKSLMSEMVEPNEVTYNILISAYCREGNLIQAXXXXXXXXXXXXXPDVITITKVV 181
           G VG+ +SLM E+ EPN+VT+N+LI+AYC+E NL+QA             PDV+T+TKVV
Sbjct: 227 GKVGRARSLMDEIEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVPDVVTMTKVV 286

Query: 182 ELLCNKGRAKEAVEVLERV 238
           E+LCN GR  EAVE+LERV
Sbjct: 287 EILCNAGRVTEAVEMLERV 305