BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024483
         (996 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20809.3| unnamed protein product [Vitis vinifera]              439   e-121
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   437   e-120
ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   424   e-116
ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   419   e-115
ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis t...   414   e-113

>emb|CBI20809.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  439 bits (1130), Expect = e-121
 Identities = 212/295 (71%), Positives = 247/295 (83%)
 Frame = -2

Query: 995  LKDRNYVTIKSRILHPEFRGRMVSAFLAHHFSEVTDYSFTADMETELDNVSAGMTEWKGL 816
            L+DRNYVT+K+R+L+PEFRGRMVSAFL+HHFSEVTDYSFTADMETELDNVSAG+TEWKGL
Sbjct: 723  LQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGLTEWKGL 782

Query: 815  LKDYWTRFSMYCAQAGNVDIRQVEKMLEEKFGDFLFASLPNKSRTCPSCLTGTLTFKVSR 636
            LKDYWTRFSMYC +  NV I QVEKMLE+KFGDFLF+ LP+KSRTCPSC+ GTL FKVSR
Sbjct: 783  LKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPDKSRTCPSCMEGTLIFKVSR 842

Query: 635  FGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGP 456
            FG+GYFIGCD+HPKCKYIAK L G+++E E   +     EPK LGL P S+EKILLKNGP
Sbjct: 843  FGSGYFIGCDQHPKCKYIAKMLDGDDDE-EVASQDKTFEEPKALGLSPGSSEKILLKNGP 901

Query: 455  YGCYIQLGDDRKGYSPKRASVGQMKNVDSITLEQALDWLQYPVLLGNHLEDGGPVHLKIS 276
            YG Y+QLG+DRKGY PKRASV  +K+V SITLE AL+ L+YPV LGNH  D  PV LK++
Sbjct: 902  YGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRYPVTLGNHPNDDHPVVLKLA 961

Query: 275  KFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILLSKDAKRCGRPPSKPKDSLDAI 111
            K GF+IRH+RTIAPVPKN+ P  IT+EKA+K+LL KD K+ GRP +K K  L  I
Sbjct: 962  KNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQSGRPKNKKKQELHII 1016


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  437 bits (1125), Expect = e-120
 Identities = 210/292 (71%), Positives = 246/292 (84%)
 Frame = -2

Query: 995  LKDRNYVTIKSRILHPEFRGRMVSAFLAHHFSEVTDYSFTADMETELDNVSAGMTEWKGL 816
            L+DRNYVT+K+R+L+PEFRGRMVSAFL+HHFSEVTDYSFTADMETELDNVSAG+TEWKGL
Sbjct: 891  LQDRNYVTVKNRVLYPEFRGRMVSAFLSHHFSEVTDYSFTADMETELDNVSAGLTEWKGL 950

Query: 815  LKDYWTRFSMYCAQAGNVDIRQVEKMLEEKFGDFLFASLPNKSRTCPSCLTGTLTFKVSR 636
            LKDYWTRFSMYC +  NV I QVEKMLE+KFGDFLF+ LP+KSRTCPSC+ GTL FKVSR
Sbjct: 951  LKDYWTRFSMYCNRVSNVHIHQVEKMLEKKFGDFLFSFLPDKSRTCPSCMEGTLIFKVSR 1010

Query: 635  FGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGP 456
            FG+GYFIGCD+HPKCKYIAK L G+++E E   +     EPK LGL P S+EKILLKNGP
Sbjct: 1011 FGSGYFIGCDQHPKCKYIAKMLDGDDDE-EVASQDKTFEEPKALGLSPGSSEKILLKNGP 1069

Query: 455  YGCYIQLGDDRKGYSPKRASVGQMKNVDSITLEQALDWLQYPVLLGNHLEDGGPVHLKIS 276
            YG Y+QLG+DRKGY PKRASV  +K+V SITLE AL+ L+YPV LGNH  D  PV LK++
Sbjct: 1070 YGFYLQLGEDRKGYLPKRASVSHIKDVGSITLEDALELLRYPVTLGNHPNDDHPVVLKLA 1129

Query: 275  KFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILLSKDAKRCGRPPSKPKDSL 120
            K GF+IRH+RTIAPVPKN+ P  IT+EKA+K+LL KD K+ GRP +K K  +
Sbjct: 1130 KNGFSIRHRRTIAPVPKNIKPNDITLEKALKLLLGKDVKQSGRPKNKKKQEV 1181


>ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1197

 Score =  424 bits (1091), Expect = e-116
 Identities = 196/284 (69%), Positives = 240/284 (84%)
 Frame = -2

Query: 995  LKDRNYVTIKSRILHPEFRGRMVSAFLAHHFSEVTDYSFTADMETELDNVSAGMTEWKGL 816
            L+DRNYVT+KSR+L PEFRGRMVSAFL++HFSEVTDYSFTADMETELDNVSAG+TEWKGL
Sbjct: 899  LQDRNYVTVKSRVLSPEFRGRMVSAFLSNHFSEVTDYSFTADMETELDNVSAGLTEWKGL 958

Query: 815  LKDYWTRFSMYCAQAGNVDIRQVEKMLEEKFGDFLFASLPNKSRTCPSCLTGTLTFKVSR 636
            L+DYWTRF  YC +  NV I QVEKMLE+KFGD+LFASLP++SR CPSC+ GTL FKVSR
Sbjct: 959  LRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSR 1018

Query: 635  FGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGP 456
            FGAGYFIGCD+HP+CKYIAKTLYG EEE++  +    + EPKLLG+   SNEK+LLK+GP
Sbjct: 1019 FGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNTRIEEPKLLGVTSGSNEKVLLKSGP 1078

Query: 455  YGCYIQLGDDRKGYSPKRASVGQMKNVDSITLEQALDWLQYPVLLGNHLEDGGPVHLKIS 276
            YG Y+QLG+DRKGY P+RASV  +K+VDSITL+ AL+ LQYP+ LGNH +DG PV L+++
Sbjct: 1079 YGVYVQLGEDRKGYIPRRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILRLA 1138

Query: 275  KFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILLSKDAKRCGRP 144
            + GF +RH+RTIA +PKN+ P  +T+EKA++ L   D +R GRP
Sbjct: 1139 RAGFCVRHRRTIASIPKNVKPSDVTLEKALEYLSGDDVRRSGRP 1182


>ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1070

 Score =  419 bits (1078), Expect = e-115
 Identities = 196/289 (67%), Positives = 237/289 (82%)
 Frame = -2

Query: 995  LKDRNYVTIKSRILHPEFRGRMVSAFLAHHFSEVTDYSFTADMETELDNVSAGMTEWKGL 816
            L+DRNYVT+KSR+L PEFRG MVSAFL+HHFSEV DY FTADMETELDNVS G+TEWKGL
Sbjct: 772  LQDRNYVTVKSRVLSPEFRGCMVSAFLSHHFSEVMDYGFTADMETELDNVSGGLTEWKGL 831

Query: 815  LKDYWTRFSMYCAQAGNVDIRQVEKMLEEKFGDFLFASLPNKSRTCPSCLTGTLTFKVSR 636
            L+DYWTRF  YC +  NV I QVEKMLE+KFGD+LFASLP++SR CPSC+ GTL FKVSR
Sbjct: 832  LRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSR 891

Query: 635  FGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGP 456
            FGAGYFIGCD+HP+CKYIAKTLYG EEE++  +  + V EPKLLG+   S EK+LLK+GP
Sbjct: 892  FGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNSRVEEPKLLGVTSGSYEKVLLKSGP 951

Query: 455  YGCYIQLGDDRKGYSPKRASVGQMKNVDSITLEQALDWLQYPVLLGNHLEDGGPVHLKIS 276
            YG Y+QLG+DRKGY PKRASV  +K+VDSITL+ AL+ LQYP+ LGNH +DG PV LK++
Sbjct: 952  YGVYVQLGEDRKGYIPKRASVSHIKDVDSITLKDALEVLQYPLTLGNHPKDGQPVILKLA 1011

Query: 275  KFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILLSKDAKRCGRPPSKPK 129
            + G  +RH+RT+A VPKN+ P  +T+EKA++ L   D +R GRP  K K
Sbjct: 1012 RAGLCVRHRRTVASVPKNVKPSDVTLEKALEYLSGDDVRRSGRPKGKSK 1060


>ref|NP_194849.3| DNA topoisomerase, type IA, core [Arabidopsis thaliana]
            gi|332660478|gb|AEE85878.1| DNA topoisomerase, type IA,
            core [Arabidopsis thaliana]
          Length = 1284

 Score =  414 bits (1063), Expect = e-113
 Identities = 188/285 (65%), Positives = 240/285 (84%)
 Frame = -2

Query: 995  LKDRNYVTIKSRILHPEFRGRMVSAFLAHHFSEVTDYSFTADMETELDNVSAGMTEWKGL 816
            L+ R YVTIK+R+L+PEFR RMVSAFL H+F+E+TDYSFTADMETELDNVS G+TEWKGL
Sbjct: 982  LQHRKYVTIKNRVLYPEFRARMVSAFLTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1041

Query: 815  LKDYWTRFSMYCAQAGNVDIRQVEKMLEEKFGDFLFASLPNKSRTCPSCLTGTLTFKVSR 636
            L+DYWTRFS YC +  NV   QVEKMLE+K+ D LF+ LP  SRTCPSC+ GTL+FK S+
Sbjct: 1042 LRDYWTRFSAYCKRVENVQRSQVEKMLEKKYEDVLFSLLPYPSRTCPSCMEGTLSFKASK 1101

Query: 635  FGAGYFIGCDEHPKCKYIAKTLYGEEEEDEDPKKMNIVSEPKLLGLHPSSNEKILLKNGP 456
            FGAGYFIGCD+HP CK+IAKTLYGE+E+++DP K N V EPKLLGLHP+++EK++LK GP
Sbjct: 1102 FGAGYFIGCDQHPSCKFIAKTLYGEDEDEDDPPKNNCVEEPKLLGLHPNTSEKVILKCGP 1161

Query: 455  YGCYIQLGDDRKGYSPKRASVGQMKNVDSITLEQALDWLQYPVLLGNHLEDGGPVHLKIS 276
            YG Y+QLG+D+KG++PKRA+   +K+V+SITLE AL+ L+YP+ LG H EDG PV LK+S
Sbjct: 1162 YGHYVQLGEDKKGHTPKRANAAHIKDVNSITLESALELLRYPLTLGTHPEDGQPVVLKLS 1221

Query: 275  KFGFTIRHKRTIAPVPKNLDPKKITMEKAMKILLSKDAKRCGRPP 141
            K GFTI+H+R +A VPKN +P ++T+E+AMK+L  K+ ++ GRPP
Sbjct: 1222 KSGFTIKHRRNMATVPKNTEPGEVTLERAMKLLSGKNVRKSGRPP 1266