BLASTX nr result

ID: Coptis21_contig00024471 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024471
         (578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324415.1| predicted protein [Populus trichocarpa] gi|2...    83   3e-14
ref|XP_003528940.1| PREDICTED: uncharacterized protein LOC100798...    69   4e-10
ref|XP_003629641.1| hypothetical protein MTR_8g083450 [Medicago ...    69   7e-10
ref|XP_003534195.1| PREDICTED: uncharacterized protein LOC100306...    68   1e-09
ref|XP_003530613.1| PREDICTED: uncharacterized protein LOC100500...    64   1e-08

>ref|XP_002324415.1| predicted protein [Populus trichocarpa] gi|222865849|gb|EEF02980.1|
           predicted protein [Populus trichocarpa]
          Length = 83

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 8/84 (9%)
 Frame = +2

Query: 191 MASPGTIDVANSPKDSKGE-----STISPKQGQCLCSPTTHNGSFRCRFH---RSVASTW 346
           MAS G + ++ SP+   GE     ++ SPK GQCLCSPTTH GSFRCR H   RS A+  
Sbjct: 1   MASHGKLSISTSPESGNGERSSAVASSSPK-GQCLCSPTTHQGSFRCRLHRAPRSSAAPM 59

Query: 347 MRRSKSMPTNSSTTSISQKSVETS 418
           M+RSKSMP   + TS+S KSVE++
Sbjct: 60  MKRSKSMPPKDAPTSLSPKSVEST 83


>ref|XP_003528940.1| PREDICTED: uncharacterized protein LOC100798389 [Glycine max]
          Length = 80

 Score = 69.3 bits (168), Expect = 4e-10
 Identities = 40/78 (51%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
 Frame = +2

Query: 191 MASPG---TIDVANSPKDSKGES---TISPKQGQCLCSPTTHNGSFRCRFHR---SVAST 343
           MAS G    + V+ SPK   G     T S  +GQCLCSPTTH GSFRCR HR   +  + 
Sbjct: 1   MASQGHGNKLIVSTSPKSDSGGGGGGTGSLPKGQCLCSPTTHEGSFRCRLHRGHTASPAN 60

Query: 344 WMRRSKSMPTNSSTTSIS 397
           WM+RSKSMP N    S S
Sbjct: 61  WMKRSKSMPANKPVVSDS 78


>ref|XP_003629641.1| hypothetical protein MTR_8g083450 [Medicago truncatula]
           gi|357521029|ref|XP_003630803.1| hypothetical protein
           MTR_8g103590 [Medicago truncatula]
           gi|355523663|gb|AET04117.1| hypothetical protein
           MTR_8g083450 [Medicago truncatula]
           gi|355524825|gb|AET05279.1| hypothetical protein
           MTR_8g103590 [Medicago truncatula]
          Length = 102

 Score = 68.6 bits (166), Expect = 7e-10
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
 Frame = +2

Query: 209 IDVANSPKDSKG---ESTISPKQGQCLCSPTTHNGSFRCRFHR------SVASTWMRRSK 361
           +  ++SPK   G   ++  S  +G+CLCSPTTH GSFRCRFHR      S    WM+R+K
Sbjct: 27  VSTSSSPKSDSGIGGDAAASFPKGRCLCSPTTHEGSFRCRFHRSGSFSSSAPPPWMKRTK 86

Query: 362 SMPTNSSTTSIS 397
           SMP N + + +S
Sbjct: 87  SMPPNHNKSVVS 98


>ref|XP_003534195.1| PREDICTED: uncharacterized protein LOC100306261 [Glycine max]
           gi|255628035|gb|ACU14362.1| unknown [Glycine max]
          Length = 82

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
 Frame = +2

Query: 191 MASPG---TIDVANSPKDSKGE-----STISPKQGQCLCSPTTHNGSFRCRFHRSVAST- 343
           MAS G    + V+ SPK   G      +  S  +GQCLCSPTTH GSFRCR HR   ++ 
Sbjct: 1   MASQGHGNKLIVSTSPKSDSGSGGGGGAVGSLPKGQCLCSPTTHEGSFRCRLHRGPTASP 60

Query: 344 --WMRRSKSMPTNSSTTSIS 397
             WM+RSKSMP N    S S
Sbjct: 61  TNWMKRSKSMPANKPVVSDS 80


>ref|XP_003530613.1| PREDICTED: uncharacterized protein LOC100500563 [Glycine max]
           gi|255630637|gb|ACU15678.1| unknown [Glycine max]
          Length = 69

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 28/51 (54%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
 Frame = +2

Query: 227 PKDSKGESTISPKQGQCLCSPTTHNGSFRCRFHRSVAS-----TWMRRSKS 364
           P+   G  T S  +GQCLCSPTTH GSFRCRFHRS  +     +WM+RS +
Sbjct: 18  PESDSGNGTTSSPKGQCLCSPTTHEGSFRCRFHRSATASSSPPSWMKRSNN 68


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