BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024463
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_974481.1| F-box/kelch-repeat protein SKIP30 [Arabidopsis ...    52   2e-13
ref|XP_002878504.1| kelch repeat-containing F-box family protein...    54   2e-13
ref|NP_191881.1| F-box/kelch-repeat protein SKIP30 [Arabidopsis ...    52   2e-13
ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    63   1e-07
ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|...    57   6e-06

>ref|NP_974481.1| F-box/kelch-repeat protein SKIP30 [Arabidopsis thaliana]
           gi|143013636|sp|Q9M1W7.2|SKI30_ARATH RecName:
           Full=F-box/kelch-repeat protein SKIP30; AltName:
           Full=SKP1-interacting partner 30
           gi|332646929|gb|AEE80450.1| F-box/kelch-repeat protein
           SKIP30 [Arabidopsis thaliana]
          Length = 352

 Score = 52.4 bits (124), Expect(2) = 2e-13
 Identities = 29/65 (44%), Positives = 36/65 (55%)
 Frame = +3

Query: 435 DTVDPLTGDHNGSSRRTKFWSYGHLLPQCARWE*MLVRGATVRCCLFD*KGVVACGITTF 614
           D V P+TGDH+G+    + WSY  +  Q      MLV  A   CC+   K VVA G TT 
Sbjct: 119 DAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTC 178

Query: 615 RKSIT 629
           RKSI+
Sbjct: 179 RKSIS 183



 Score = 50.1 bits (118), Expect(2) = 2e-13
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +1

Query: 142 VLLHCLARVPLSI-----LTCRLFHSWRSALCSHKLFRARFEVEASKDLLSVCAIDTVIM 306
           V L CLA VPL +     L  R   SWR+A+ SH+LFR R E+ +S+ LL VCA D   +
Sbjct: 19  VALRCLAHVPLHLHPNLELVSR---SWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENI 75

Query: 307 SQLY 318
            Q+Y
Sbjct: 76  WQVY 79


>ref|XP_002878504.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324342|gb|EFH54763.1| kelch
           repeat-containing F-box family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 345

 Score = 53.9 bits (128), Expect(2) = 2e-13
 Identities = 29/65 (44%), Positives = 38/65 (58%)
 Frame = +3

Query: 435 DTVDPLTGDHNGSSRRTKFWSYGHLLPQCARWE*MLVRGATVRCCLFD*KGVVACGITTF 614
           D V+PLTGDH+G+    + WSY  +L +      ML+  A   CC+   K VVA G TT 
Sbjct: 112 DAVNPLTGDHDGTFATDEVWSYDFVLRRWTPLAPMLLPRAMFACCVLQGKIVVAGGFTTC 171

Query: 615 RKSIT 629
           RKSI+
Sbjct: 172 RKSIS 176



 Score = 48.5 bits (114), Expect(2) = 2e-13
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
 Frame = +1

Query: 133 LPD-VLLHCLARVPLSI-----LTCRLFHSWRSALCSHKLFRARFEVEASKDLLSVCAID 294
           +PD V L CLA VPL +     L  R   SWR+A+ S +LFR R EV +S+ LL VCA D
Sbjct: 8   IPDAVALRCLAHVPLHLHPNLELVSR---SWRAAIRSAELFRVRQEVRSSEHLLCVCAFD 64

Query: 295 TVIMSQLY 318
              + Q+Y
Sbjct: 65  PENIWQVY 72


>ref|NP_191881.1| F-box/kelch-repeat protein SKIP30 [Arabidopsis thaliana]
           gi|7523404|emb|CAB86423.1| putative protein [Arabidopsis
           thaliana] gi|21593314|gb|AAM65263.1| unknown
           [Arabidopsis thaliana] gi|110738141|dbj|BAF01002.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332646928|gb|AEE80449.1| F-box/kelch-repeat protein
           SKIP30 [Arabidopsis thaliana]
          Length = 345

 Score = 52.4 bits (124), Expect(2) = 2e-13
 Identities = 29/65 (44%), Positives = 36/65 (55%)
 Frame = +3

Query: 435 DTVDPLTGDHNGSSRRTKFWSYGHLLPQCARWE*MLVRGATVRCCLFD*KGVVACGITTF 614
           D V P+TGDH+G+    + WSY  +  Q      MLV  A   CC+   K VVA G TT 
Sbjct: 112 DAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTC 171

Query: 615 RKSIT 629
           RKSI+
Sbjct: 172 RKSIS 176



 Score = 50.1 bits (118), Expect(2) = 2e-13
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +1

Query: 142 VLLHCLARVPLSI-----LTCRLFHSWRSALCSHKLFRARFEVEASKDLLSVCAIDTVIM 306
           V L CLA VPL +     L  R   SWR+A+ SH+LFR R E+ +S+ LL VCA D   +
Sbjct: 12  VALRCLAHVPLHLHPNLELVSR---SWRAAIRSHELFRVRKELRSSEHLLCVCAFDPENI 68

Query: 307 SQLY 318
            Q+Y
Sbjct: 69  WQVY 72


>ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis
           vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED:
           F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis
           vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED:
           F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis
           vinifera]
          Length = 345

 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
 Frame = +3

Query: 111 GLIEGLPSSRCFAALSCTSALIHTDLQIVSLLEKCPLQPQTL*SPV*GRGIQRPPLCMC- 287
           GLIEGLP +     L+     +H  L++VS   +  ++   L       G     LC+C 
Sbjct: 3   GLIEGLPDAVALRCLAWVPFYLHPRLELVSRSWRDAIRGPELFKARQEVGSSEDLLCVCA 62

Query: 288 ----N*YCNYVAA--LWLS*GGG*TYLFFLQRFGT*QTLVLSPRRKSVCLYL*RQDTVDP 449
               N +  Y     LW+S     + +  L  FG   T         + +     D VDP
Sbjct: 63  FDPENLWQLYDPRKDLWISLPVLPSRIRHLAHFGAVSTA------GKLFVLGGGSDAVDP 116

Query: 450 LTGDHNGSSRRTKFWSYGHLLPQCARWE*MLVRGATVRCCLFD*KGVVACGITTFRKSIT 629
           LTGD +GS    + WSY  ++ Q A    MLV  A   CC+ D K VVA G T+ RKSI+
Sbjct: 117 LTGDQDGSFATNEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSCRKSIS 176

Query: 630 R 632
           +
Sbjct: 177 Q 177


>ref|XP_002524761.1| Protein AFR, putative [Ricinus communis]
           gi|223535945|gb|EEF37604.1| Protein AFR, putative
           [Ricinus communis]
          Length = 345

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
 Frame = +3

Query: 114 LIEGLPSSRCFAALSCTSALIHTDLQIVSLLEKCPLQPQTL*SPV*GRGIQRPPLCMC-- 287
           LIEGLP +     ++     +H  L++VS   +  ++   L       G     LC+C  
Sbjct: 4   LIEGLPDAIAIRCIARVPFYLHPKLELVSHSWRSAIRSPELFKARQEVGSAEDLLCVCAF 63

Query: 288 ---N*YCNY--VAALWLS*GGG*TYLFFLQRFGT*QTLVLSPRRKSVCLYL*RQDTVDPL 452
              N +  Y  +  LW++     + +  L  FG     V+S   K   L     D VDPL
Sbjct: 64  EPENLWQLYDPLRDLWITLPVLPSKIRHLAHFG-----VVSTAGKLYVLGG-GSDAVDPL 117

Query: 453 TGDHNGSSRRTKFWSYGHLLPQCARWE*MLVRGATVRCCLFD*KGVVACGITTFRKSITR 632
           TGD +G+    + WSY  ++ Q A    MLV  A   CC+   K VVA G T+ RKSI++
Sbjct: 118 TGDQDGNFATNEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSCRKSISQ 177