BLASTX nr result
ID: Coptis21_contig00024364
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00024364 (583 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-a... 251 5e-65 ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricin... 250 1e-64 ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis ... 249 3e-64 ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabid... 248 5e-64 emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera] 244 6e-63 >ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Cucumis sativus] gi|449523563|ref|XP_004168793.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Cucumis sativus] Length = 1113 Score = 251 bits (642), Expect = 5e-65 Identities = 127/157 (80%), Positives = 140/157 (89%) Frame = +3 Query: 3 LRLSGSGEKSIIFSQWTSFFDLLEIALKKKGIGFLRFDGRLSQKNREYVLKEFSDSKEKM 182 + L GSGEKSI+FSQWT+FFDLLEI LK+K IGF RFDG+LSQK+RE VLKEFS+SKE Sbjct: 957 INLLGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIK 1016 Query: 183 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKXXXXXXXFIVKDTV 362 V+L+SLKAGGVGLNLTAASNVF+MDPWWNPAVEEQAIMRIHRIGQK FIVKDTV Sbjct: 1017 VMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVRVRRFIVKDTV 1076 Query: 363 EERMQEVQARKERMIAGALTDGEVRSVRIEELKMLFR 473 EERMQ+VQARK+RMIAGALTD EVR+ RIEELKMLFR Sbjct: 1077 EERMQQVQARKQRMIAGALTDEEVRTARIEELKMLFR 1113 >ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis] gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16, putative [Ricinus communis] Length = 1051 Score = 250 bits (638), Expect = 1e-64 Identities = 127/157 (80%), Positives = 138/157 (87%) Frame = +3 Query: 3 LRLSGSGEKSIIFSQWTSFFDLLEIALKKKGIGFLRFDGRLSQKNREYVLKEFSDSKEKM 182 +R S GEKSIIFSQWTSF DLLEI L+++ IGFLRFDG+L QK RE LKEF+++KEKM Sbjct: 895 IRRSDCGEKSIIFSQWTSFLDLLEIPLRRRAIGFLRFDGKLVQKQRERTLKEFNETKEKM 954 Query: 183 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKXXXXXXXFIVKDTV 362 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQK FIVKDT+ Sbjct: 955 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKDTL 1014 Query: 363 EERMQEVQARKERMIAGALTDGEVRSVRIEELKMLFR 473 EERMQ+VQARK+RMIAGALTD EVRS RIEELKMLFR Sbjct: 1015 EERMQQVQARKQRMIAGALTDEEVRSARIEELKMLFR 1051 >ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311253|gb|EFH41677.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 1305 Score = 249 bits (635), Expect = 3e-64 Identities = 124/157 (78%), Positives = 140/157 (89%) Frame = +3 Query: 3 LRLSGSGEKSIIFSQWTSFFDLLEIALKKKGIGFLRFDGRLSQKNREYVLKEFSDSKEKM 182 ++ SGSGEKSI+FSQWTSF DLLEI L++KG FLRFDG+L+QK RE VLKEF+++K+K Sbjct: 1149 IQKSGSGEKSIVFSQWTSFLDLLEIPLRRKGFEFLRFDGKLAQKGREKVLKEFNETKQKT 1208 Query: 183 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKXXXXXXXFIVKDTV 362 +LLMSLKAGGVGLNLTAAS+VFLMDPWWNPAVEEQAIMRIHRIGQK FIVKDTV Sbjct: 1209 ILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTV 1268 Query: 363 EERMQEVQARKERMIAGALTDGEVRSVRIEELKMLFR 473 EERMQ+VQARK+RMIAGALTD EVRS R+EELKMLFR Sbjct: 1269 EERMQQVQARKQRMIAGALTDEEVRSARLEELKMLFR 1305 >ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana] gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Short=SMARCA3-like protein 3 gi|10178192|dbj|BAB11616.1| DNA repair protein-like [Arabidopsis thaliana] gi|332007595|gb|AED94978.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana] Length = 1277 Score = 248 bits (633), Expect = 5e-64 Identities = 123/157 (78%), Positives = 140/157 (89%) Frame = +3 Query: 3 LRLSGSGEKSIIFSQWTSFFDLLEIALKKKGIGFLRFDGRLSQKNREYVLKEFSDSKEKM 182 ++ SGSGEKSI+FSQWTSF DLLEI L+++G FLRFDG+L+QK RE VLKEF+++K+K Sbjct: 1121 IKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKT 1180 Query: 183 VLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKXXXXXXXFIVKDTV 362 +LLMSLKAGGVGLNLTAAS+VFLMDPWWNPAVEEQAIMRIHRIGQK FIVKDTV Sbjct: 1181 ILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTV 1240 Query: 363 EERMQEVQARKERMIAGALTDGEVRSVRIEELKMLFR 473 EERMQ+VQARK+RMIAGALTD EVRS R+EELKMLFR Sbjct: 1241 EERMQQVQARKQRMIAGALTDEEVRSARLEELKMLFR 1277 >emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera] Length = 1249 Score = 244 bits (624), Expect = 6e-63 Identities = 121/151 (80%), Positives = 136/151 (90%) Frame = +3 Query: 21 GEKSIIFSQWTSFFDLLEIALKKKGIGFLRFDGRLSQKNREYVLKEFSDSKEKMVLLMSL 200 GEKSI+FSQWTSF DLLEI L+++GIGFLR+DG++ QK RE +LKEFS+++EKMVLLMSL Sbjct: 1099 GEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILKEFSETEEKMVLLMSL 1158 Query: 201 KAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKXXXXXXXFIVKDTVEERMQE 380 KAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQ+ FIVKDTVEERMQ+ Sbjct: 1159 KAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVRVRRFIVKDTVEERMQQ 1218 Query: 381 VQARKERMIAGALTDGEVRSVRIEELKMLFR 473 VQARK+RMI GALTD EVR+ RIEELKMLFR Sbjct: 1219 VQARKQRMITGALTDEEVRTARIEELKMLFR 1249