BLASTX nr result

ID: Coptis21_contig00024278 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024278
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511997.1| conserved hypothetical protein [Ricinus comm...    94   1e-17
ref|XP_003609136.1| hypothetical protein MTR_4g112370 [Medicago ...    94   1e-17
gb|ACJ84318.1| unknown [Medicago truncatula] gi|388515575|gb|AFK...    94   1e-17
ref|XP_002328689.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17
ref|XP_002317922.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16

>ref|XP_002511997.1| conserved hypothetical protein [Ricinus communis]
           gi|223549177|gb|EEF50666.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 256

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 53/81 (65%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
 Frame = -3

Query: 236 LKKKLYLSTKAVSRFRSV---FGKNRPSLSSGHGMRVVCTLFGYRHGHVNFAFQEDPNSY 66
           L  K  L   AV+R RSV   FGKNR SL  G G RVV TLFGYR GHV+FAFQ DPNS 
Sbjct: 58  LTPKKKLPAVAVARLRSVLAAFGKNRSSLPHGLGPRVVGTLFGYRRGHVHFAFQRDPNSP 117

Query: 65  TAFFIELPTPTSNLIREMASG 3
            AF IEL TP S L+REMASG
Sbjct: 118 PAFLIELATPISGLVREMASG 138


>ref|XP_003609136.1| hypothetical protein MTR_4g112370 [Medicago truncatula]
           gi|355510191|gb|AES91333.1| hypothetical protein
           MTR_4g112370 [Medicago truncatula]
          Length = 322

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 50/75 (66%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
 Frame = -3

Query: 218 LSTKAVSRFRSV---FGKNRPSLSSGHGMRVVCTLFGYRHGHVNFAFQEDPNSYTAFFIE 48
           L T A+SR RSV   F KNR +L SG G RVV TLFGYR GHV+FAFQ+DP S  AF IE
Sbjct: 63  LQTVAISRIRSVLTVFSKNRSNLPSGLGSRVVGTLFGYRRGHVHFAFQKDPTSQPAFLIE 122

Query: 47  LPTPTSNLIREMASG 3
           L TP S L+REMASG
Sbjct: 123 LATPISGLVREMASG 137


>gb|ACJ84318.1| unknown [Medicago truncatula] gi|388515575|gb|AFK45849.1| unknown
           [Medicago truncatula]
          Length = 255

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 50/75 (66%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
 Frame = -3

Query: 218 LSTKAVSRFRSV---FGKNRPSLSSGHGMRVVCTLFGYRHGHVNFAFQEDPNSYTAFFIE 48
           L T A+SR RSV   F KNR +L SG G RVV TLFGYR GHV+FAFQ+DP S  AF IE
Sbjct: 63  LQTVAISRIRSVLTVFSKNRSNLPSGLGSRVVGTLFGYRRGHVHFAFQKDPTSQPAFLIE 122

Query: 47  LPTPTSNLIREMASG 3
           L TP S L+REMASG
Sbjct: 123 LATPISGLVREMASG 137


>ref|XP_002328689.1| predicted protein [Populus trichocarpa] gi|222838865|gb|EEE77216.1|
           predicted protein [Populus trichocarpa]
          Length = 248

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/80 (66%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
 Frame = -3

Query: 233 KKKLYLSTKAVSRFRSV---FGKNRPSLSSGHGMRVVCTLFGYRHGHVNFAFQEDPNSYT 63
           KKKL     AV+R RSV    GKNR SL  G G RVV TLFGYR GHV+FAFQ+DPNS  
Sbjct: 54  KKKL--PAVAVARLRSVVTALGKNRSSLPLGLGSRVVGTLFGYRRGHVHFAFQKDPNSPP 111

Query: 62  AFFIELPTPTSNLIREMASG 3
           AF IEL TP S L+REMASG
Sbjct: 112 AFLIELATPISGLVREMASG 131


>ref|XP_002317922.1| predicted protein [Populus trichocarpa] gi|222858595|gb|EEE96142.1|
           predicted protein [Populus trichocarpa]
          Length = 249

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 52/84 (61%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
 Frame = -3

Query: 245 VPPLKKKLYLSTKAVSRFRSVF---GKNRPSLSSGHGMRVVCTLFGYRHGHVNFAFQEDP 75
           +P  KK+L     AV+R RSV    GKNR SL  G G RVV TLFGYR GHV+FAFQ DP
Sbjct: 51  MPTPKKRL--PAVAVARLRSVLAALGKNRSSLPMGLGSRVVGTLFGYRRGHVHFAFQRDP 108

Query: 74  NSYTAFFIELPTPTSNLIREMASG 3
           NS   F IEL TP S L+REMASG
Sbjct: 109 NSPPTFLIELATPISGLVREMASG 132


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