BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024272
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ric...   335   1e-89
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...   327   3e-87
emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]   324   2e-86
emb|CBI20809.3| unnamed protein product [Vitis vinifera]              320   6e-85
ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine...   316   8e-84

>ref|XP_002528003.1| prokaryotic DNA topoisomerase, putative [Ricinus communis]
            gi|223532629|gb|EEF34415.1| prokaryotic DNA
            topoisomerase, putative [Ricinus communis]
          Length = 1071

 Score =  335 bits (859), Expect = 1e-89
 Identities = 183/295 (62%), Positives = 204/295 (69%), Gaps = 3/295 (1%)
 Frame = +3

Query: 312  TTVASGDAKISGSKQAKKPNPTKLATPTGDAKVNGSKQAFNSEKASVTEIAGRSVQASEI 491
            T  +SGD  +  +     PN     T T   K + +         SV E A     +S  
Sbjct: 161  TEQSSGDVNLDSTAPVTTPNSKPTPTTTRHKKHSKTNSKKQQSSTSVEEAAQAKTSSSTK 220

Query: 492  LPAGDK--VDKSNLTPDNSKKTVGKPTRKRKPQKKVTVHMKPDKAPAVLVEVKKRPLAKG 665
                 K  +D S  T     K   KPT K K  K  TV + PDK        K +P  +G
Sbjct: 221  TKTKPKELLDASASTKPQPNKKTRKPTGKPKAIK--TVKVSPDKQQQHKPMHKSKPFRQG 278

Query: 666  -LRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEVVPSYGHVRDLAGRSGSVRPDDDFSM 842
             L+ LYPPT KSVVVVES+TKAKVIQ YLG M+EV+PSYGHVRDLA RSGSVRPDDDFSM
Sbjct: 279  SLKPLYPPTAKSVVVVESVTKAKVIQGYLGPMFEVLPSYGHVRDLAARSGSVRPDDDFSM 338

Query: 843  VWEVPSAAWTHLKTIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVAR 1022
            VWEVPS AWTHLKTIKVALNGAENL+LASDPDREGEAIAWHI EMLQQQDALH+ + VAR
Sbjct: 339  VWEVPSPAWTHLKTIKVALNGAENLVLASDPDREGEAIAWHIIEMLQQQDALHQGVTVAR 398

Query: 1023 VVFHEITESSIKSALQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQ 1187
            VVFHEITE SIK+ALQ PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQ
Sbjct: 399  VVFHEITEQSIKNALQAPREIDLNLVHAYLARRALDYLIGFNISPLLWRKLPGCQ 453


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score =  327 bits (839), Expect = 3e-87
 Identities = 182/299 (60%), Positives = 215/299 (71%), Gaps = 6/299 (2%)
 Frame = +3

Query: 309  GTTVASGDAKISGSKQAKKPNPTKLATPTGDAKVNGSKQAFNSEKASVTEIAGRSVQASE 488
            G+       K S +K+ K+   T     +  A+   +K +  + K+++T+   +S QAS+
Sbjct: 252  GSKATEKQRKQSRTKKNKE-QVTSTDASSDVAQKKSTKSSSEANKSNITK-KSQSPQASK 309

Query: 489  ILPAGDK----VDKSNLTPDNSKKTVGKPTRKRKPQKKVTVHMKPDKAPAV--LVEVKKR 650
                G+K    +D S  T   SKK  G   +K K  K      K      +  +  +++R
Sbjct: 310  NNSTGNKPVEALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQR 369

Query: 651  PLAKGLRSLYPPTGKSVVVVESLTKAKVIQRYLGDMYEVVPSYGHVRDLAGRSGSVRPDD 830
            PL K    LYP +GKSVVVVES+TKAKVIQ YLGDMYEV+PSYGHVRDLAGRSGSVRPDD
Sbjct: 370  PLKK----LYPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDD 425

Query: 831  DFSMVWEVPSAAWTHLKTIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENI 1010
            DFSMVWEVPSAAWTHLK+IKVAL GAENLILASDPDREGEAIAWHI EML QQDALH+++
Sbjct: 426  DFSMVWEVPSAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDL 485

Query: 1011 NVARVVFHEITESSIKSALQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQ 1187
             VARVVFHEITESSIKSAL  PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQ
Sbjct: 486  TVARVVFHEITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQ 544


>emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
          Length = 1039

 Score =  324 bits (831), Expect = 2e-86
 Identities = 184/343 (53%), Positives = 225/343 (65%), Gaps = 6/343 (1%)
 Frame = +3

Query: 177  DGEKEVKVEVAISTPAKGSGNIKKTXXXXXXXXXXXXXXXXELSGTTVASGDAKISGSKQ 356
            +G K+V +  +IST    + N                    +++ T  +S  A+   +K 
Sbjct: 230  NGRKDVDLSPSISTSPVSNNNRGSKATEKQRKQSRTKKNKEQVTSTDASSDVAQKKSTKS 289

Query: 357  AKKPNPTKLATPTGDAKVNGSKQAFNSEKASVTEIAGRSVQASEILPAGDK----VDKSN 524
            + + N           K N +K++ + + + V  ++    +  +    G+K    +D S 
Sbjct: 290  SSEAN-----------KSNITKKSQSPQASKVRHVSICIYELFQNNSTGNKPVEALDSSV 338

Query: 525  LTPDNSKKTVGKPTRKRKPQKKVTVHMKPDKAPAV--LVEVKKRPLAKGLRSLYPPTGKS 698
             T   SKK  G   +K K  K      K      +  +  +++RPL K    LYP +GKS
Sbjct: 339  STKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKK----LYPSSGKS 394

Query: 699  VVVVESLTKAKVIQRYLGDMYEVVPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHL 878
            VVVVES+TKAKVIQ YLGDMYEV+PSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHL
Sbjct: 395  VVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSAAWTHL 454

Query: 879  KTIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVARVVFHEITESSIK 1058
            K+IKVAL GAENLILASDPDREGEAIAWHI EML QQDALH+++ VARVVFHEITESSIK
Sbjct: 455  KSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHEITESSIK 514

Query: 1059 SALQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQ 1187
            SAL  PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQ
Sbjct: 515  SALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQ 557


>emb|CBI20809.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  320 bits (819), Expect = 6e-85
 Identities = 166/230 (72%), Positives = 184/230 (80%), Gaps = 2/230 (0%)
 Frame = +3

Query: 504  DKVDKSNLTPDNSKKTVGKPTRKRKPQKKVTVHMKPDKAPAV--LVEVKKRPLAKGLRSL 677
            + +D S  T   SKK  G   +K K  K      K      +  +  +++RPL K    L
Sbjct: 33   EALDSSVSTKSQSKKATGSSNKKGKSPKVANESPKKQTVHTMGKIKSLEQRPLKK----L 88

Query: 678  YPPTGKSVVVVESLTKAKVIQRYLGDMYEVVPSYGHVRDLAGRSGSVRPDDDFSMVWEVP 857
            YP +GKSVVVVES+TKAKVIQ YLGDMYEV+PSYGHVRDLAGRSGSVRPDDDFSMVWEVP
Sbjct: 89   YPSSGKSVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAGRSGSVRPDDDFSMVWEVP 148

Query: 858  SAAWTHLKTIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVARVVFHE 1037
            SAAWTHLK+IKVAL GAENLILASDPDREGEAIAWHI EML QQDALH+++ VARVVFHE
Sbjct: 149  SAAWTHLKSIKVALGGAENLILASDPDREGEAIAWHIIEMLLQQDALHKDLTVARVVFHE 208

Query: 1038 ITESSIKSALQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQ 1187
            ITESSIKSAL  PR+ID +LVHAYLARRALDYLIGF+ISPLLWRKLP CQ
Sbjct: 209  ITESSIKSALDAPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQ 258


>ref|XP_003551158.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1070

 Score =  316 bits (809), Expect = 8e-84
 Identities = 175/288 (60%), Positives = 205/288 (71%), Gaps = 3/288 (1%)
 Frame = +3

Query: 333  AKISGSKQAKKPNPTKLATPTGDAKVNGSKQAFNSEKASVTEIAGRSVQASEILPAGDKV 512
            A   GS   KK   +  A  +G+      K+    +K + +     +V+AS+    G+K 
Sbjct: 146  AASEGSLGEKKKKGSSRAAASGEEDEKSVKKKTAKQKKTTSTQEDGAVEASKKSSKGNKK 205

Query: 513  --DKSNLTPDNSKK-TVGKPTRKRKPQKKVTVHMKPDKAPAVLVEVKKRPLAKGLRSLYP 683
               K +LT    ++ T    + K K +KK           + L+E  K       + LYP
Sbjct: 206  KDSKKSLTESAIEEITENSASAKDKVKKK--------NGNSSLIEEAKPLWNFTYKPLYP 257

Query: 684  PTGKSVVVVESLTKAKVIQRYLGDMYEVVPSYGHVRDLAGRSGSVRPDDDFSMVWEVPSA 863
            PTGKSVVVVES+TKAKVI+RYLGDMYEV+PSYGHVRDLA RSGSVRPDDDFSMVWEVPS 
Sbjct: 258  PTGKSVVVVESVTKAKVIKRYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPSP 317

Query: 864  AWTHLKTIKVALNGAENLILASDPDREGEAIAWHITEMLQQQDALHENINVARVVFHEIT 1043
            AWTHLK+IKVAL+GAENLILASDPDREGEAIAWHI EMLQQQ ALH+NI++ARVVFHEIT
Sbjct: 318  AWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQGALHDNISLARVVFHEIT 377

Query: 1044 ESSIKSALQNPRDIDADLVHAYLARRALDYLIGFSISPLLWRKLPACQ 1187
            E SIK +LQ PR+ID +LV AYLARRALDYLIGFSISPLLWRKLP CQ
Sbjct: 378  EKSIKGSLQTPREIDINLVQAYLARRALDYLIGFSISPLLWRKLPGCQ 425