BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024239
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1...   145   3e-33
ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|2...   144   7e-33
ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1...   137   1e-30
emb|CBI21810.3| unnamed protein product [Vitis vinifera]              135   5e-30
gb|ACN27072.1| unknown [Zea mays] gi|414871796|tpg|DAA50353.1| T...   134   8e-30

>ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
           [Glycine max]
          Length = 414

 Score =  145 bits (367), Expect = 3e-33
 Identities = 81/122 (66%), Positives = 89/122 (72%), Gaps = 3/122 (2%)
 Frame = -3

Query: 359 LKPHCFFYLKTSAKQPLQFPVTRLSFSSDRQASITQHAS---KTRSEFNGSLSDDFDSRF 189
           LKPHC   LK      L FP   L F   R  +  +HA+   +     NG+LS DFD RF
Sbjct: 7   LKPHCVI-LKAPLSSSLLFPFP-LRF---RAVTAFKHANIQCELEGRPNGALSGDFDPRF 61

Query: 188 TDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEV 9
            DRQKALEAAMNDINN+FGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRI+E+
Sbjct: 62  IDRQKALEAAMNDINNNFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIIEI 121

Query: 8   YG 3
           YG
Sbjct: 122 YG 123


>ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|222875295|gb|EEF12426.1|
           predicted protein [Populus trichocarpa]
          Length = 387

 Score =  144 bits (363), Expect = 7e-33
 Identities = 75/109 (68%), Positives = 86/109 (78%), Gaps = 5/109 (4%)
 Frame = -3

Query: 314 PLQFPVTRLSFSSDRQASITQHASKTRSEF----NGS-LSDDFDSRFTDRQKALEAAMND 150
           PL F  +R+ F +   A++ +   + R EF    NGS LS D D+RF D+QKALEAAMND
Sbjct: 6   PLYFQFSRVCFKTSHFAAVKKKPKEIRCEFDSKVNGSPLSSDLDARFLDKQKALEAAMND 65

Query: 149 INNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYG 3
           INNSFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE++G
Sbjct: 66  INNSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIFG 114


>ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
           [Vitis vinifera]
          Length = 415

 Score =  137 bits (344), Expect = 1e-30
 Identities = 73/111 (65%), Positives = 81/111 (72%), Gaps = 10/111 (9%)
 Frame = -3

Query: 305 FPVTRLSFSSDRQASITQHASKTRSEF----------NGSLSDDFDSRFTDRQKALEAAM 156
           FP+  L  S+   +S+  H    R +           NG+LS D D RF DRQKALEAAM
Sbjct: 13  FPLKTLLPSAFPSSSLPPHMGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAM 72

Query: 155 NDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYG 3
           NDIN+SFGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRIVE+YG
Sbjct: 73  NDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYG 123


>emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  135 bits (339), Expect = 5e-30
 Identities = 69/84 (82%), Positives = 73/84 (86%), Gaps = 4/84 (4%)
 Frame = -3

Query: 242 KTRSEF----NGSLSDDFDSRFTDRQKALEAAMNDINNSFGKGSVTRLGSAGGALVETFP 75
           + R EF    NG+LS D D RF DRQKALEAAMNDIN+SFGKGSVTRLGSAGGALVETFP
Sbjct: 9   RLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFP 68

Query: 74  SGCLTLDLALGGGLPKGRIVEVYG 3
           SGCLTLD ALGGGLPKGRIVE+YG
Sbjct: 69  SGCLTLDFALGGGLPKGRIVEIYG 92


>gb|ACN27072.1| unknown [Zea mays] gi|414871796|tpg|DAA50353.1| TPA: putative recA
           DNA recombination family protein [Zea mays]
          Length = 433

 Score =  134 bits (337), Expect = 8e-30
 Identities = 74/117 (63%), Positives = 86/117 (73%), Gaps = 8/117 (6%)
 Frame = -3

Query: 329 TSAKQPLQFPV-TRLSFSSDRQAS--ITQHASKTRSEF-----NGSLSDDFDSRFTDRQK 174
           T++   L FP  +R   ++ R A+  +T  A + R EF     NG+LS + D R  DRQK
Sbjct: 9   TASHLALSFPARSRRRRAAPRAAAGGLTARARRLRCEFVAGGGNGALSGEDDPRLVDRQK 68

Query: 173 ALEAAMNDINNSFGKGSVTRLGSAGGALVETFPSGCLTLDLALGGGLPKGRIVEVYG 3
            L+AAMNDINNSFGKGSVTRLGSAGGA VETFPSGCLTLD ALGGGLPKGR+VEVYG
Sbjct: 69  VLDAAMNDINNSFGKGSVTRLGSAGGAFVETFPSGCLTLDFALGGGLPKGRVVEVYG 125