BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024227
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum]   116   2e-24
ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nost...   116   2e-24
ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [S...   116   2e-24
ref|XP_002511274.1| replication factor C / DNA polymerase III ga...   116   2e-24
ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group] g...   115   4e-24

>gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum]
          Length = 1223

 Score =  116 bits (291), Expect = 2e-24
 Identities = 62/132 (46%), Positives = 82/132 (62%), Gaps = 9/132 (6%)
 Frame = +1

Query: 28  SLSSKYQPKLFEDIAGHEILVKALSNAVQKERIAPLYLFHGPSGTGKTSTARIFSMALNC 207
           SLS KY+P  F+++ G  I+V++L NAV K RIAP YLF GP GTGKTSTARIFS ALNC
Sbjct: 461 SLSQKYKPMFFDELIGQNIVVQSLMNAVSKGRIAPFYLFQGPRGTGKTSTARIFSAALNC 520

Query: 208 ESSTHTKPCWSCRGCT-------RSLYIMDLCSGSRITGFERIRTLIQ--STTFTQIDTG 360
           +++   KPC  C  CT       R  +  D    +   G +R+R L++  ST      + 
Sbjct: 521 QTTDDDKPCGCCTECTEFTSGKRREFWEFD---STNRRGIDRVRYLLKSLSTGLASSSSR 577

Query: 361 FKVFIIEECHSL 396
           +KVF+I+ECH L
Sbjct: 578 YKVFVIDECHLL 589


>ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
           gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and
           tau subunits [Nostoc sp. PCC 7120]
          Length = 429

 Score =  116 bits (291), Expect = 2e-24
 Identities = 59/130 (45%), Positives = 86/130 (66%), Gaps = 7/130 (5%)
 Frame = +1

Query: 31  LSSKYQPKLFEDIAGHEILVKALSNAVQKERIAPLYLFHGPSGTGKTSTARIFSMALNCE 210
           L  KY+P++  ++ G E +V+ L NA+  ++IAP YLF GP GTGKTSTARI + +LNC+
Sbjct: 5   LHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQ 64

Query: 211 SSTH--TKPCWSCRGC-----TRSLYIMDLCSGSRITGFERIRTLIQSTTFTQIDTGFKV 369
           SS    TKPC  C  C     + S+ + +L + S  +G E IR LI +T F  +++ FK+
Sbjct: 65  SSNEPTTKPCGECNSCKGITASSSVDVTELDAASN-SGVELIRELISTTQFAPVESRFKI 123

Query: 370 FIIEECHSLT 399
           FII+ECH+L+
Sbjct: 124 FIIDECHALS 133


>ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
           gi|241930566|gb|EES03711.1| hypothetical protein
           SORBIDRAFT_03g036320 [Sorghum bicolor]
          Length = 1176

 Score =  116 bits (290), Expect = 2e-24
 Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 5/129 (3%)
 Frame = +1

Query: 28  SLSSKYQPKLFEDIAGHEILVKALSNAVQKERIAPLYLFHGPSGTGKTSTARIFSMALNC 207
           SLS KY+P+ F +I G   +V++LSNA+ +ERIAP YLFHGP GTGKTS+ARI S AL+C
Sbjct: 418 SLSQKYRPRSFLEIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALSC 477

Query: 208 ESSTHTKPCWSCRGCT-----RSLYIMDLCSGSRITGFERIRTLIQSTTFTQIDTGFKVF 372
            ++  TKPC  C  C+       + ++++ + +R  G  R+R LI++   +   + +KVF
Sbjct: 478 TATGETKPCGVCTECSDFFTGNGINLIEVDATNR-KGINRVRHLIENIPASATSSRYKVF 536

Query: 373 IIEECHSLT 399
           +++ECH ++
Sbjct: 537 VVDECHMVS 545


>ref|XP_002511274.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis] gi|223550389|gb|EEF51876.1|
           replication factor C / DNA polymerase III gamma-tau
           subunit, putative [Ricinus communis]
          Length = 1025

 Score =  116 bits (290), Expect = 2e-24
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 5/131 (3%)
 Frame = +1

Query: 19  SSTSLSSKYQPKLFEDIAGHEILVKALSNAVQKERIAPLYLFHGPSGTGKTSTARIFSMA 198
           S  S S K++PK FE++ G  ++V++L +A+ + R+  LYLFHGP GTGKTS +RIF+ A
Sbjct: 291 SPRSFSQKFRPKSFEELVGQNVVVRSLLSAIAQGRVTSLYLFHGPRGTGKTSASRIFAAA 350

Query: 199 LNCESSTHTKPCWSCRGCT-----RSLYIMDLCSGSRITGFERIRTLIQSTTFTQIDTGF 363
           LNC S    KPC  CR C      RS  + ++ S  RI   ERIR LI++     + + F
Sbjct: 351 LNCLSLEEYKPCGLCRECVQFFSGRSRDVKEVDS-VRINRVERIRALIKNAAIPPVSSRF 409

Query: 364 KVFIIEECHSL 396
           KVFI++ECH L
Sbjct: 410 KVFIVDECHLL 420


>ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group]
           gi|77553354|gb|ABA96150.1| ATPase, AAA family protein,
           expressed [Oryza sativa Japonica Group]
           gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa
           Japonica Group] gi|125578827|gb|EAZ19973.1| hypothetical
           protein OsJ_35564 [Oryza sativa Japonica Group]
          Length = 1174

 Score =  115 bits (288), Expect = 4e-24
 Identities = 56/129 (43%), Positives = 86/129 (66%), Gaps = 5/129 (3%)
 Frame = +1

Query: 28  SLSSKYQPKLFEDIAGHEILVKALSNAVQKERIAPLYLFHGPSGTGKTSTARIFSMALNC 207
           SLS KY+PKLF +I G  I+ ++LSNA+ +E+IAP YLF GP GTGKTSTARIFSM L+C
Sbjct: 401 SLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLSC 460

Query: 208 ESSTHTKPCWSCRGCTRSL-----YIMDLCSGSRITGFERIRTLIQSTTFTQIDTGFKVF 372
            +    KPC  C+ CT  L      ++++ + +R     RI+ L+++   +   + +K+F
Sbjct: 461 LAPGENKPCGICKECTDFLSGNGTNLIEVDASNR-KSINRIKNLLENIPPSATSSRYKLF 519

Query: 373 IIEECHSLT 399
           +++ECH ++
Sbjct: 520 VVDECHMVS 528