BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024222
         (1501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containi...   370   e-100
emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]   353   9e-95
ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containi...   346   8e-93
ref|XP_003607207.1| Pentatricopeptide repeat-containing protein ...   322   1e-85
ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containi...   320   6e-85

>ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
            [Vitis vinifera]
          Length = 636

 Score =  370 bits (949), Expect = e-100
 Identities = 179/276 (64%), Positives = 224/276 (81%)
 Frame = +3

Query: 3    SSYVQIKDYRQALVLFREMQNNGVEPTEITLIAVFGACAESGDLILGREIHDLLKQKEFK 182
            + YVQIKDY +AL LFREM+   VE T+ITLI+V GACAE+G L +GR+IH  LKQ+E+K
Sbjct: 361  AGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYK 420

Query: 183  IDGYLGIALVDIYAKCGSLNVAREVFDMLRMKHVSCWNSMIMGLSVHGYSEDALELFSTM 362
            I+GYL  ALVD+YAKCG LN+A EVF  L+MKH+SCWN+MI+ L+VHGY E+AL LFSTM
Sbjct: 421  IEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTM 480

Query: 363  ETKCEEVVPDRITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYGCMVDLFSRW 542
            E   +   P+R+TFIGVLIACSHKGLV+EG  +F RM+++Y I PD+KHYGCMVDL SR 
Sbjct: 481  EMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRC 540

Query: 543  GKLDEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKDGDYVLLS 722
            G L EA+ +IKTMPF+ANSVLWRTLLG+CR + +V+LAEE+F  + ++EP +DGDYVLLS
Sbjct: 541  GLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLS 600

Query: 723  NIYADMERWEDVERMRNVMIELGVLKKSGSSQIAIK 830
            NIYA+ +RW DVER+R+ MI  GV KK GSS I I+
Sbjct: 601  NIYAEAQRWNDVERVRSEMIGSGVPKKPGSSHIGIR 636


>emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score =  353 bits (905), Expect = 9e-95
 Identities = 169/265 (63%), Positives = 214/265 (80%)
 Frame = +3

Query: 3    SSYVQIKDYRQALVLFREMQNNGVEPTEITLIAVFGACAESGDLILGREIHDLLKQKEFK 182
            + YVQIKDY +AL LFREM+   VE T+ITLI+V GACAE+G L +GR+IH  LKQ+E+K
Sbjct: 255  AGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYK 314

Query: 183  IDGYLGIALVDIYAKCGSLNVAREVFDMLRMKHVSCWNSMIMGLSVHGYSEDALELFSTM 362
            I+GYL  ALVD+YAKCG LN+A EVF  L+MKH+SCWN+MI+ L+VHGY E+AL LFSTM
Sbjct: 315  IEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTM 374

Query: 363  ETKCEEVVPDRITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYGCMVDLFSRW 542
            E   +   P+R+TFIGVLIACSHKGLV+EG  +F RM+++Y I PD+KHYGCMVDL SR 
Sbjct: 375  EMSVDGARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRC 434

Query: 543  GKLDEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKDGDYVLLS 722
            G L EA+ +IKTMPF+ANSVLWRTLLG+CR + +V+LAEE+F  + ++EP +DGDYVLLS
Sbjct: 435  GLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLS 494

Query: 723  NIYADMERWEDVERMRNVMIELGVL 797
            NIYA+ +RW DVER   ++  L V+
Sbjct: 495  NIYAEAQRWNDVERASKILANLIVM 519


>ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like
            [Cucumis sativus] gi|449521725|ref|XP_004167880.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At5g15300-like [Cucumis sativus]
          Length = 521

 Score =  346 bits (888), Expect = 8e-93
 Identities = 164/273 (60%), Positives = 211/273 (77%)
 Frame = +3

Query: 3    SSYVQIKDYRQALVLFREMQNNGVEPTEITLIAVFGACAESGDLILGREIHDLLKQKEFK 182
            S YV +KDY+ AL LF  M+   +  TE+T I++ GACAE G L +G++IHD LK+K ++
Sbjct: 249  SGYVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYR 308

Query: 183  IDGYLGIALVDIYAKCGSLNVAREVFDMLRMKHVSCWNSMIMGLSVHGYSEDALELFSTM 362
            I+GYLG A+VD+YAKCG L +A EVF+ + MK VSCWN+MIMGL+VHG+ E ALE+F +M
Sbjct: 309  IEGYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSM 368

Query: 363  ETKCEEVVPDRITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYGCMVDLFSRW 542
            + +  +  P+RITFI +LIACSHKGL+ EG  +F  M+ KY I PD+KHYGCM+DL SRW
Sbjct: 369  KAEDGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSRW 428

Query: 543  GKLDEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKDGDYVLLS 722
            G L+EAY +IKT PF + SVLWRTLLG CR + +VEL EE+F  ++ELEP KDGDYVLLS
Sbjct: 429  GFLEEAYVMIKTCPFSSCSVLWRTLLGGCRLHRHVELGEESFRKLAELEPGKDGDYVLLS 488

Query: 723  NIYADMERWEDVERMRNVMIELGVLKKSGSSQI 821
            NIYA+ ERW+DVER+R  MI  GV KK+GSS +
Sbjct: 489  NIYAEEERWDDVERLRKEMINYGVCKKAGSSHV 521


>ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355508262|gb|AES89404.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  322 bits (826), Expect = 1e-85
 Identities = 156/274 (56%), Positives = 209/274 (76%), Gaps = 1/274 (0%)
 Frame = +3

Query: 12   VQIKDYRQALVLFREMQNNGVEPTEITLIAVFGACAESGDLILGREIHDLLKQKEFKIDG 191
            V ++DY  AL LF EMQN GV+PTE+TLI++ GACAE+G L +G +I++ LK  E KI+ 
Sbjct: 263  VSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIES 322

Query: 192  YLGIALVDIYAKCGSLNVAREVFDMLRMKHVSCWNSMIMGLSVHGYSEDALELFSTMETK 371
            YLG ALV++Y KCG+L++A E+F+ ++MK VSCWN+M++GL+VHGY E+  +LF+ ME  
Sbjct: 323  YLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEES 382

Query: 372  CE-EVVPDRITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYGCMVDLFSRWGK 548
                + PDR+TFIGVL+ACSHKGLV++   YF  M+ +Y I PD KHYGCMVDL SRWG 
Sbjct: 383  LGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGL 442

Query: 549  LDEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKDGDYVLLSNI 728
            L+EAYQ+I T PF  + VLWRTLLG+CRT  N ELAE +F  +++L+   DGDYVLLSNI
Sbjct: 443  LEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNI 502

Query: 729  YADMERWEDVERMRNVMIELGVLKKSGSSQIAIK 830
            YA+  RW++VER+R+ M  L V +++G SQI +K
Sbjct: 503  YAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 536


>ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like
            [Glycine max]
          Length = 535

 Score =  320 bits (820), Expect = 6e-85
 Identities = 158/270 (58%), Positives = 209/270 (77%)
 Frame = +3

Query: 12   VQIKDYRQALVLFREMQNNGVEPTEITLIAVFGACAESGDLILGREIHDLLKQKEFKIDG 191
            V +KDY  A+ LF EMQN  V PTE+TLI+V GACAE+G L +G +IH+ LK    KI+G
Sbjct: 257  VSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEG 316

Query: 192  YLGIALVDIYAKCGSLNVAREVFDMLRMKHVSCWNSMIMGLSVHGYSEDALELFSTMETK 371
            YLG AL+++Y+KCG LN A EVF+ +R+K +SCWN+MI+GL+VHGY E+AL+LFS ME+ 
Sbjct: 317  YLGNALLNMYSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESG 376

Query: 372  CEEVVPDRITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYGCMVDLFSRWGKL 551
             + V P+R+TF+GVLIACSHKGLV++    F  M  +Y I PD+KHYGC+VDL SR+G L
Sbjct: 377  LDTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGCIVDLLSRFGLL 436

Query: 552  DEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKDGDYVLLSNIY 731
            +EA+Q+IKT P   +++LWRTLLG+CRT GNVELA+ +F  +++L    DGDYVLLSNIY
Sbjct: 437  EEAHQMIKTAPLQNSAILWRTLLGACRTQGNVELAKVSFQQLAKLGRLTDGDYVLLSNIY 496

Query: 732  ADMERWEDVERMRNVMIELGVLKKSGSSQI 821
            A+ ERW++VER+R+ MI L V K+   SQI
Sbjct: 497  AEAERWDEVERVRSEMIGLHVPKQVAYSQI 526



 Score = 64.3 bits (155), Expect = 8e-08
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
 Frame = +3

Query: 219 YAKCGSLNVAREVFDMLRMKHVSCWNSMIMG-LSVHGYSEDALELFSTMETKCEEVVPDR 395
           Y + G +  AR VF ++  +    WNS+I G +SV  Y E A+ LFS M+    EV P  
Sbjct: 225 YIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDY-EGAMGLFSEMQN--AEVRPTE 281

Query: 396 ITFIGVLIACSHKGLVEEGCCYFCRMIDKYNIRPDMKHYG---------CMVDLFSRWGK 548
           +T I VL AC+  G +E G            I   +K  G          +++++S+ GK
Sbjct: 282 VTLISVLGACAETGALEMGS----------KIHESLKACGHKIEGYLGNALLNMYSKCGK 331

Query: 549 LDEAYQVIKTMPFDANSVLWRTLLGSCRTYGNVELAEEAFLMISELEPPKD 701
           L+ A++V   M     S  W  ++     +G     EEA  + SE+E   D
Sbjct: 332 LNSAWEVFNGMRIKTLS-CWNAMIVGLAVHG---YCEEALQLFSEMESGLD 378