BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024174
         (1035 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523454.1| RNA binding protein, putative [Ricinus commu...    61   4e-07
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    61   5e-07
ref|XP_002521812.1| conserved hypothetical protein [Ricinus comm...    57   6e-06
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    57   6e-06
ref|XP_002467532.1| hypothetical protein SORBIDRAFT_01g029700 [S...    57   7e-06

>ref|XP_002523454.1| RNA binding protein, putative [Ricinus communis]
           gi|223537282|gb|EEF38913.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 446

 Score = 61.2 bits (147), Expect = 4e-07
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
 Frame = +2

Query: 41  VKHIWKLNVDANLQLFIWKLYHHYLPTGDKLHSRKFQ---------GALETDSHLFFECD 193
           V   W+LN+   ++ F+W+L H+ LP  + L +RK           G +ET +++F +C 
Sbjct: 127 VNKCWRLNILHGVKHFMWRLNHNLLPCIENLKNRKIDMGEICSRCGGCVETQTYVFKKCQ 186

Query: 194 WVKGVWFASAAAIKIDAYSYTDCRMWLELFLSWLSDDYDDLNRRGLHCLSFLYEIWKHRN 373
           +V+  W      +++D     D + W+    S   DD+ +     L C       W  RN
Sbjct: 187 FVRSFWLTYPLGLRVDTIVVEDLKNWVNQIHSVGDDDFIEKFAMLLWC------YWNLRN 240

Query: 374 SIKFEKK 394
              FE+K
Sbjct: 241 KFIFERK 247


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
 Frame = +2

Query: 50  IWKLNVDANLQLFIWKLYHHYLPTGDKLHSRKFQG---------ALETDSHLFFECDWVK 202
           IWKL     ++ F+WKL    L TGD L  R  +            ET  HLFF+C + +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 203 GVWFASAAAIKIDAYSYTDCRMWLELFL-SWLSDDYDDLNRRGLHCLSFLYEIWKHRNSI 379
            VW AS    +    +       +EL L S L++    L    +     L+ +WK RN +
Sbjct: 78  QVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIW---ILWRLWKSRNQL 134

Query: 380 KFEKKFLSMKDIWSNTHRSWSNNLEAFQNDSQISSQNDMLLLIKTLQVLTSGH 538
            F++K +           SW N L+  +ND Q     +  +     QV +S H
Sbjct: 135 VFQQKSI-----------SWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRH 176


>ref|XP_002521812.1| conserved hypothetical protein [Ricinus communis]
           gi|223539025|gb|EEF40622.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 315

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
 Frame = +2

Query: 44  KHIWKLNVDANLQLFIWKLYHHYLPTGDKLHSRK-------FQGALETDSHLFFECDWVK 202
           K++WK+ +   +++FIWKL+   LP G    SR        + GA ++  HLFF C + +
Sbjct: 171 KNLWKMKIPNKIKIFIWKLFSIALPVGSSSASRLGADGSCIWCGAWKSRMHLFFLCPFSQ 230

Query: 203 GVWFASAAAIKIDAYSYTDCRMWLELFLSWLSDDYDDLNRRGLHCLSF-LYEIWKHRNSI 379
            VW  S   +    +  +D  +  E  L  L       N     C +F L+ IWK RN+ 
Sbjct: 231 HVWSLSPLRLLPSVFHLSDISLVWEKIL--LDIQTLSSNDHLPSCPAFILWHIWKARNAS 288

Query: 380 KFEKKFLSMKDIWSNTHRSWSNNLEAFQ 463
            F+ ++ S + +    HR+ + +L+ FQ
Sbjct: 289 VFDNRWTSEQGL---LHRALT-DLDNFQ 312


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 57.4 bits (137), Expect = 6e-06
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
 Frame = +2

Query: 38   PVKHIWKLNVDANLQLFIWKLYHHYLPTGDKLHSR---------KFQGALETDSHLFFEC 190
            P K IWK  V   +++FIW    + + T D L  R         +F   +ET  HLFF+C
Sbjct: 840  PNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNKCQFCDKVETVQHLFFDC 899

Query: 191  DWVKGVWFASAAAIKIDAYSYTDCRMWLELFLSWL-SDDYDDLNRRGLHCLSFLYEIWKH 367
               + +W   A A+ +            +LF SW+ S D    N   +   + L+ IWK 
Sbjct: 900  PLARLIWNIIACALNVKPVLSRQ-----DLFGSWIQSMDKFTKNLVIVGIAAVLWSIWKC 954

Query: 368  RNSIKFEKKF----LSMKDIWSNTHRSWS--NNLEAFQNDSQISSQNDMLLLIKTLQVLT 529
            RN   FE+K     + +  +  N   SW+     EA + + Q+ ++   LL      V  
Sbjct: 955  RNKACFERKLPNDPIELVYLACNWVDSWAILQKQEASRRNLQLGTR---LLKQVANDVFN 1011

Query: 530  SGHNFS 547
            S H +S
Sbjct: 1012 SSHGWS 1017


>ref|XP_002467532.1| hypothetical protein SORBIDRAFT_01g029700 [Sorghum bicolor]
           gi|241921386|gb|EER94530.1| hypothetical protein
           SORBIDRAFT_01g029700 [Sorghum bicolor]
          Length = 283

 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
 Frame = +2

Query: 41  VKHIWKLN-VDANLQLFIWKLYHHYLPTG-------DKLHSR-KFQGALETDSHLFFECD 193
           +K +W+   +   ++ FIW+L    + TG       DK+       GALE D HLFF CD
Sbjct: 109 LKRVWRCKRISPVIKTFIWRLIRRAIATGARANNLTDKIDQNCALCGALENDVHLFFHCD 168

Query: 194 WVKGVWFASAAAIKIDAYSYTDCRMWLELFLSWLSDDYDDLNRRGLHCLSFLYEIWKHRN 373
           + + VWF  +A   I + +    +  ++  L+ + D+    +   +   ++L+ IWK RN
Sbjct: 169 FARAVWF--SAKTPIISSTLLQEQDGVQQCLTQIIDNRTS-DEILIQITAYLWFIWKARN 225

Query: 374 SIKFEKKFLSMKDIWSNTHRSWSNNLEAFQNDSQISSQNDMLLLIKTLQV 523
            ++F K             RSWS        D+ I + N + L  K+L +
Sbjct: 226 DLRFRK-------------RSWSVLQVYLAVDAYIHAFNKVQLKEKSLNI 262