BLASTX nr result

ID: Coptis21_contig00024113 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024113
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330559.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002523168.1| ATP binding protein, putative [Ricinus commu...    59   4e-07
ref|XP_002300559.1| predicted protein [Populus trichocarpa] gi|2...    59   5e-07

>ref|XP_002330559.1| predicted protein [Populus trichocarpa] gi|222872117|gb|EEF09248.1|
           predicted protein [Populus trichocarpa]
          Length = 1681

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 35/63 (55%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +1

Query: 34  CSAPM-SDGSGSSTKPISGISSTLESLNGGSVRNKLQNSAIYSTSTSFSDRPSVGSQENN 210
           C+ P+ S  SG+    ISGI S LESL GGS +  LQ SAI S+S SFSD   VGSQE  
Sbjct: 732 CTVPLVSPSSGNYAASISGIDSKLESLLGGSNQKLLQTSAINSSSASFSDGQLVGSQERG 791

Query: 211 TFF 219
            FF
Sbjct: 792 PFF 794


>ref|XP_002523168.1| ATP binding protein, putative [Ricinus communis]
           gi|223537575|gb|EEF39199.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1548

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +1

Query: 4   SSNVNNKYTGCSAPMSDGSGS-STKPISGISSTLESLNGGSVRNKLQNSAIYSTSTSFSD 180
           +SN   K   C+AP+   SG   T  ISGI S L+SL+GGS +  LQ+SA+ S+S SFSD
Sbjct: 618 ASNPVRKTLYCNAPLFPVSGGYCTASISGIDSKLKSLDGGSSQKLLQSSAMNSSSASFSD 677

Query: 181 RPSVGSQENNTF 216
              VGSQE   F
Sbjct: 678 GQLVGSQERGAF 689


>ref|XP_002300559.1| predicted protein [Populus trichocarpa] gi|222847817|gb|EEE85364.1|
           predicted protein [Populus trichocarpa]
          Length = 1716

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/58 (60%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  CSAPM-SDGSGSSTKPISGISSTLESLNGGSVRNKLQNSAIYSTSTSFSDRPSVGSQE 204
           C+AP+ S   G+ T  ISGI S LESL GGS R  LQ SAI S+S SFSD   VGSQE
Sbjct: 772 CTAPLVSPSGGNYTASISGIDSKLESLLGGSNRKLLQTSAINSSSASFSDGQLVGSQE 829


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