BLASTX nr result

ID: Coptis21_contig00024055 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024055
         (637 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264797.2| PREDICTED: uncharacterized protein LOC100262...    86   4e-15
emb|CBI18230.3| unnamed protein product [Vitis vinifera]               82   6e-14
ref|XP_002524310.1| conserved hypothetical protein [Ricinus comm...    69   9e-10
ref|XP_002302164.1| AP2/ERF domain-containing transcription fact...    65   8e-09
gb|ADZ28106.1| ethylene response factor 3 [Malus x domestica]          63   5e-08

>ref|XP_002264797.2| PREDICTED: uncharacterized protein LOC100262406 [Vitis vinifera]
           gi|147834261|emb|CAN66025.1| hypothetical protein
           VITISV_028773 [Vitis vinifera]
          Length = 421

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 68/199 (34%), Positives = 83/199 (41%), Gaps = 22/199 (11%)
 Frame = +3

Query: 3   FDTXXXXXXXXXXXXLRFRGSRAKLNFPENVQLQQSVPISQPTQISVPDSLTAHSPVSLN 182
           FDT            LRFRG+RAKLNFPENV+L   + +S  TQ+S+        PVS +
Sbjct: 231 FDTAEAAARAYDEAALRFRGNRAKLNFPENVRLMPPLQVSPATQLSISGPPATQLPVSSS 290

Query: 183 PSLFFQPPSFNQQQLQRPDVNAIRNYMEYTQLYGGYSDFHTHPPSPLHQ----------- 329
           P     PP F  Q LQ PD+  +R+Y EY+QL     DFH   P+ L +           
Sbjct: 291 P-----PPFFQGQALQNPDI--VRDYWEYSQLLQSSGDFHGQQPTSLLEQMFYSQSLASL 343

Query: 330 -----------IFCXXXXXXXXXXXXXXXXXXXXLFPGLSENQHACYLFPPENFDQSGSV 476
                       F                      +P L   Q   Y  PP N  Q GS 
Sbjct: 344 QSSASLSSPSISFSSSSSSSSTSSLSSRFSSSSTPYPLLFPEQQMGYPQPPGNQGQ-GSS 402

Query: 477 SGFPPGTSRSDFGHYPSSS 533
           S F P  S +  GHYPSSS
Sbjct: 403 SDF-PAPSWTGSGHYPSSS 420


>emb|CBI18230.3| unnamed protein product [Vitis vinifera]
          Length = 440

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 49/112 (43%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
 Frame = +3

Query: 3   FDTXXXXXXXXXXXXLRFRGSRAKLNFPENVQLQQSVPISQPTQISVPDSLTAHSPVSLN 182
           FDT            LRFRG+RAKLNFPENV+L   + +S  TQ+S+        PVS +
Sbjct: 283 FDTAEAAARAYDEAALRFRGNRAKLNFPENVRLMPPLQVSPATQLSISGPPATQLPVSSS 342

Query: 183 PSLFFQPPSFNQQQLQRPDVNAIRNYMEYTQLYGGYSDFH-THPPSPLHQIF 335
           P     PP F  Q LQ PD+  +R+Y EY+QL     DFH   P S L Q+F
Sbjct: 343 P-----PPFFQGQALQNPDI--VRDYWEYSQLLQSSGDFHGQQPTSLLEQMF 387


>ref|XP_002524310.1| conserved hypothetical protein [Ricinus communis]
           gi|223536401|gb|EEF38050.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 448

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 69/209 (33%), Positives = 84/209 (40%), Gaps = 32/209 (15%)
 Frame = +3

Query: 3   FDTXXXXXXXXXXXXLRFRGSRAKLNFPENVQLQQSVPISQPTQISVPDSLTAHSPVSLN 182
           FDT            LRFRG+RAKLNFPENV++     +  P Q ++P    +  P+S  
Sbjct: 252 FDTAEAAARAYDEAALRFRGNRAKLNFPENVRI-----LPPPIQTTIP---VSQIPMSRP 303

Query: 183 PSLFFQPPSFNQQQLQR----PDVNAIRNYMEYTQLYGGYSDFH--THPPSPLHQIF--- 335
           P    QPPS  QQQ Q        N +R+Y EY+QL     DFH    P S L Q+F   
Sbjct: 304 PPP--QPPSQQQQQQQSLFHLQTDNPLRDYWEYSQLLQSSGDFHGVQQPSSLLEQMFYNQ 361

Query: 336 ---------------------CXXXXXXXXXXXXXXXXXXXXLFPGLSENQHACYL-FPP 449
                                                      FP L   Q   Y   PP
Sbjct: 362 QLASLQSNLSLPSSALSFGASSSGLSTLSSSSSSSLSAGSSASFPLLLAGQQLGYFRTPP 421

Query: 450 ENFDQ-SGSVSGFPPGTSRSDFGHYPSSS 533
           +N +Q SGS    PP   RSD  HYPSS+
Sbjct: 422 QNQNQPSGSDISVPP---RSDSTHYPSST 447


>ref|XP_002302164.1| AP2/ERF domain-containing transcription factor [Populus
           trichocarpa] gi|222843890|gb|EEE81437.1| AP2/ERF
           domain-containing transcription factor [Populus
           trichocarpa]
          Length = 457

 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 68/219 (31%), Positives = 83/219 (37%), Gaps = 41/219 (18%)
 Frame = +3

Query: 3   FDTXXXXXXXXXXXXLRFRGSRAKLNFPENVQLQQSVPISQPTQISVPDSLTAHSPVSLN 182
           FDT            LRFRG+RAKLNFPENV+L      +Q   ++      +HS   L+
Sbjct: 248 FDTAEAAARAYDDAALRFRGNRAKLNFPENVRLLP----AQTQNVTASQVPISHS--QLS 301

Query: 183 PSLFFQPPSFNQQQLQRPDVNA----------IRNYMEYTQLYGGYSDFHTH-------- 308
             L  QP S  +QQ QRP   A          IR+Y EY+QL     +FH H        
Sbjct: 302 SHLQLQPISSPRQQAQRPQAPAPALFQSQADIIRDYWEYSQLLQSSGEFHHHQQQQQQQQ 361

Query: 309 -PPSPLHQIFCXXXXXXXXXXXXXXXXXXXXL---------------------FPGLSEN 422
            P S L  +F                     +                     FP L   
Sbjct: 362 QPSSLLQPMFYNPQVASLQSSALTSLSSSTSVSSLAAISSGSSPSTFSPSASSFPLLFAG 421

Query: 423 QHACYLFPPENFD-QSGSVSGFPPGTSRSDFGHYPSSSG 536
           Q   Y  PP+N +  SGS    PP T   D  H PSSSG
Sbjct: 422 QQLGYFRPPQNQNPASGSDFPVPPWT---DSSHNPSSSG 457


>gb|ADZ28106.1| ethylene response factor 3 [Malus x domestica]
          Length = 472

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
 Frame = +3

Query: 3   FDTXXXXXXXXXXXXLRFRGSRAKLNFPENVQLQQSVPISQPTQISVPDSLTAHSPVSLN 182
           FDT            LRFRG+RAKLNFPENV+L Q  P     Q    +S        L 
Sbjct: 259 FDTAEAAARAYDEAALRFRGNRAKLNFPENVRLVQPPPPPPTLQTFNSNSRPTQYAQPLQ 318

Query: 183 PSLFFQPPS----FNQQQLQRPDVNAIRNYMEYTQLYGGYSDFH 302
           P    QPP      +QQ   +P  + +R+Y +Y+QL    +DFH
Sbjct: 319 PPPLPQPPQQQLYHSQQLFIQPSSDLLRDYFDYSQLLQSSADFH 362


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