BLASTX nr result
ID: Coptis21_contig00023935
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00023935 (1191 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 518 e-145 ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho... 511 e-142 ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 509 e-142 gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 502 e-140 ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 498 e-138 >ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera] gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera] Length = 1127 Score = 518 bits (1335), Expect = e-145 Identities = 259/395 (65%), Positives = 319/395 (80%) Frame = +2 Query: 5 NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184 NALL KLKYAPKI+Q+FAGP +ASKFSADRYHI KE+ EFLW+RTTDFS +KS+G S+SF Sbjct: 173 NALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSF 232 Query: 185 CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364 CW+++EG D ASFP+Y++ + L+L++ E F + +VPL+KC+S L YEI F Sbjct: 233 CWEIKEGFPALDIFASFPYYKD-LTELTLEQG-EGFCSDSGLVPLVKCESGPKLAYEILF 290 Query: 365 QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544 QLN+LVH+QKISLAAV+ DLI++L +L +DT +ILQKL +ST Y+P F+++Q H + Sbjct: 291 QLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHII 350 Query: 545 RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724 K+LP S S L N+ SCHR LVTP+K+Y LGP++E+SNYVVKHYA +ASDF+RV Sbjct: 351 NMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRV 410 Query: 725 TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904 +FVEEDWSKL S+A+S I + F++P RT IYHRILSILR+GI IG+KRF+FLAFSASQ Sbjct: 411 SFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQ 470 Query: 905 LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084 LRS+SVWMFASN V+ +DIREWMGCFK IRSVSKCAARMGQLFSSS QTL VP +DV Sbjct: 471 LRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEV 530 Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189 IPDIEVT+DG YCFSDGIGKISL+ AKQVAQKCG Sbjct: 531 IPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCG 565 >ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa] gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa] Length = 1110 Score = 511 bits (1317), Expect = e-142 Identities = 255/395 (64%), Positives = 320/395 (81%) Frame = +2 Query: 5 NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184 NA++ KL+Y P+IYQ+ +GP +ASKFS +RY CKE+ +FLW+RTTD S +KSIG S+SF Sbjct: 175 NAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSF 234 Query: 185 CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364 CW++ EG SDT +FP+YQE++N L L++ E+F +A E VPLI+C SD L YE+ F Sbjct: 235 CWEIGEGLEASDTFRNFPYYQEDMNRLDLEDG-EEFCSASETVPLIRCGSD-KLAYEVLF 292 Query: 365 QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544 QLN+LVH+QKISLAAV+ DLIK+L +L+++T +ILQKL ++ TCY+P FV+ L Sbjct: 293 QLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSL--- 349 Query: 545 RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724 ++ L S +S L E N+ SCHR L+TP+K++ LGP+ ETSNYVVKH+A++ASDF+RV Sbjct: 350 ---RESLSSPPKS-LTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRV 405 Query: 725 TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904 TFVEEDWSKL ++A+ST I++G+F++P RT IYHRILSILRDG IG+KRFEFLAFSASQ Sbjct: 406 TFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQ 465 Query: 905 LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084 LRS+SVWMFASN+ VK EDIR+WMGCF IRSVSKCAARMGQLFSSS QT VVP +DV Sbjct: 466 LRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEI 525 Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189 IPDIEVTTDGI YCFSDGIGKISL+ AKQVA KCG Sbjct: 526 IPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCG 560 >ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 983 Score = 509 bits (1311), Expect = e-142 Identities = 247/395 (62%), Positives = 315/395 (79%) Frame = +2 Query: 5 NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184 NA+L KLKY +IY++ +GP +ASKFSADRYH+CKE+ +F+W+RTTDFS +KS+G S+SF Sbjct: 22 NAILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFDFIWVRTTDFSSVKSVGQSTSF 81 Query: 185 CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364 CW++ EG SD SFP+Y E + L++ E++G+A EIVPL+KC SD L YEI F Sbjct: 82 CWEIEEGLEASDIFKSFPYYTEAREEVILEDG-EEWGSASEIVPLVKCGSDSKLPYEILF 140 Query: 365 QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544 QLN+LVH+QKISLAAV+ +LI LGSL++DT ++ILQKL + TCY+P F++ QLH Sbjct: 141 QLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLHKLAVTCYDPLAFIKKQLHVP 200 Query: 545 RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724 + K S L N+ SCHR L+TP+K+Y LGP++E+SNYVVK++A +ASDF+RV Sbjct: 201 GRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFASYASDFMRV 260 Query: 725 TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904 TFVEEDWSKL ++A+S I++G+F++P RT IYHRILSILRDGI IG+K+FEFLAFSASQ Sbjct: 261 TFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHRILSILRDGIVIGAKKFEFLAFSASQ 320 Query: 905 LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084 LRS+SVWMFASN K E+IREWMGCF I S+SKCAARMGQLFSSS+QT +V +D+ Sbjct: 321 LRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQDMEI 380 Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189 IPDIEVT+DGI YCFSDGIGKISL+ A+QVAQKCG Sbjct: 381 IPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCG 415 >gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana] Length = 1120 Score = 502 bits (1292), Expect = e-140 Identities = 249/394 (63%), Positives = 308/394 (78%) Frame = +2 Query: 8 ALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSFC 187 ALL KLK+APK+YQR +GP +ASKFS+DRYH+C+E+ EFLW+RTTDFS +KSIG SSS C Sbjct: 176 ALLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPC 235 Query: 188 WKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFFQ 367 W++ +G + SD L+ P+ ++ L L E + + +A E+VPL SD L YEI FQ Sbjct: 236 WEIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIY-SASELVPLASFPSDLKLPYEILFQ 294 Query: 368 LNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNLR 547 LN+L+H+ KISL AV DLI++L L LDT +ILQK+ ++STC+EP F++++LH L Sbjct: 295 LNSLIHTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLG 354 Query: 548 KKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRVT 727 K K+ PS S S L QN+ S HR LVTP+KVY LGP++ETSNY+VK++A HASDFLRVT Sbjct: 355 KNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVT 414 Query: 728 FVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQL 907 FVEEDW KL+ +A+S +EQG+F++P+RT IYHRILSILRDG+ IGSKRF FLAFSASQL Sbjct: 415 FVEEDWGKLSPNAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQL 474 Query: 908 RSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVSI 1087 RS+SVWMFASN VK EDIREWMGCF IRSVSKCAARMGQLFS+S QT+ V V + Sbjct: 475 RSNSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEIL 534 Query: 1088 PDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189 PDIEVT+DG+ YCFSDGIGKIS A QVAQKCG Sbjct: 535 PDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCG 568 >ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula] gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula] Length = 1308 Score = 498 bits (1282), Expect = e-138 Identities = 246/393 (62%), Positives = 308/393 (78%) Frame = +2 Query: 5 NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184 NALL KL+Y P+IYQ+ AGP +A+KF DRY CKEN EF+W+RTTDFS LKSIG+S+SF Sbjct: 176 NALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSF 235 Query: 185 CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364 W++ E S SD SFP Y+E + LSL++ EKF + E VPL+KC+ D L YE F Sbjct: 236 FWEIVEESFDSDVFRSFPLYRENLKDLSLEDG-EKFCSPTETVPLVKCRLDSKLPYESLF 294 Query: 365 QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544 QLN+LVH+QKISLA+VND+LI LL SL +T +VI QKL + STCYEP +V++QLH L Sbjct: 295 QLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVL 354 Query: 545 RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724 K+K + Q L + N+ SCHR L+TP+K+Y LGP++ETSN+VVKH+A +ASDF+R+ Sbjct: 355 SIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRI 414 Query: 725 TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904 TFVEEDWSKL ++A+S +++G+FS P RT IY R+L+ILRDGI IGSKRFEFLAFSASQ Sbjct: 415 TFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQ 474 Query: 905 LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084 LRS+SVW+FASN VK DIREWMG F IRSVSKCAARMGQLFSSS+QT + +DV Sbjct: 475 LRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDL 534 Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQK 1183 IPDIE+T+DGI YCFSDGIGKIS + A+Q+A+K Sbjct: 535 IPDIEITSDGIDYCFSDGIGKISQSFARQLAEK 567