BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023935
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   518   e-145
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...   511   e-142
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   509   e-142
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   502   e-140
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...   498   e-138

>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  518 bits (1335), Expect = e-145
 Identities = 259/395 (65%), Positives = 319/395 (80%)
 Frame = +2

Query: 5    NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184
            NALL KLKYAPKI+Q+FAGP +ASKFSADRYHI KE+ EFLW+RTTDFS +KS+G S+SF
Sbjct: 173  NALLLKLKYAPKIFQKFAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSF 232

Query: 185  CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364
            CW+++EG    D  ASFP+Y++ +  L+L++  E F +   +VPL+KC+S   L YEI F
Sbjct: 233  CWEIKEGFPALDIFASFPYYKD-LTELTLEQG-EGFCSDSGLVPLVKCESGPKLAYEILF 290

Query: 365  QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544
            QLN+LVH+QKISLAAV+ DLI++L +L +DT  +ILQKL   +ST Y+P  F+++Q H +
Sbjct: 291  QLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKRKSTRYDPISFIKAQAHII 350

Query: 545  RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724
                K+LP  S S L   N+ SCHR LVTP+K+Y LGP++E+SNYVVKHYA +ASDF+RV
Sbjct: 351  NMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRV 410

Query: 725  TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904
            +FVEEDWSKL S+A+S  I +  F++P RT IYHRILSILR+GI IG+KRF+FLAFSASQ
Sbjct: 411  SFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQ 470

Query: 905  LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084
            LRS+SVWMFASN  V+ +DIREWMGCFK IRSVSKCAARMGQLFSSS QTL VP +DV  
Sbjct: 471  LRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEV 530

Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189
            IPDIEVT+DG  YCFSDGIGKISL+ AKQVAQKCG
Sbjct: 531  IPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCG 565


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score =  511 bits (1317), Expect = e-142
 Identities = 255/395 (64%), Positives = 320/395 (81%)
 Frame = +2

Query: 5    NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184
            NA++ KL+Y P+IYQ+ +GP +ASKFS +RY  CKE+ +FLW+RTTD S +KSIG S+SF
Sbjct: 175  NAVVLKLRYGPRIYQKISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSF 234

Query: 185  CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364
            CW++ EG   SDT  +FP+YQE++N L L++  E+F +A E VPLI+C SD  L YE+ F
Sbjct: 235  CWEIGEGLEASDTFRNFPYYQEDMNRLDLEDG-EEFCSASETVPLIRCGSD-KLAYEVLF 292

Query: 365  QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544
            QLN+LVH+QKISLAAV+ DLIK+L +L+++T  +ILQKL  ++ TCY+P  FV+  L   
Sbjct: 293  QLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKLKMTCYDPLSFVKQSL--- 349

Query: 545  RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724
               ++ L S  +S L E N+ SCHR L+TP+K++ LGP+ ETSNYVVKH+A++ASDF+RV
Sbjct: 350  ---RESLSSPPKS-LTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRV 405

Query: 725  TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904
            TFVEEDWSKL ++A+ST I++G+F++P RT IYHRILSILRDG  IG+KRFEFLAFSASQ
Sbjct: 406  TFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILRDGFVIGAKRFEFLAFSASQ 465

Query: 905  LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084
            LRS+SVWMFASN+ VK EDIR+WMGCF  IRSVSKCAARMGQLFSSS QT VVP +DV  
Sbjct: 466  LRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEI 525

Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189
            IPDIEVTTDGI YCFSDGIGKISL+ AKQVA KCG
Sbjct: 526  IPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCG 560


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  509 bits (1311), Expect = e-142
 Identities = 247/395 (62%), Positives = 315/395 (79%)
 Frame = +2

Query: 5    NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184
            NA+L KLKY  +IY++ +GP +ASKFSADRYH+CKE+ +F+W+RTTDFS +KS+G S+SF
Sbjct: 22   NAILLKLKYGARIYKKISGPDIASKFSADRYHMCKEDFDFIWVRTTDFSSVKSVGQSTSF 81

Query: 185  CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364
            CW++ EG   SD   SFP+Y E    + L++  E++G+A EIVPL+KC SD  L YEI F
Sbjct: 82   CWEIEEGLEASDIFKSFPYYTEAREEVILEDG-EEWGSASEIVPLVKCGSDSKLPYEILF 140

Query: 365  QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544
            QLN+LVH+QKISLAAV+ +LI  LGSL++DT ++ILQKL  +  TCY+P  F++ QLH  
Sbjct: 141  QLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLHKLAVTCYDPLAFIKKQLHVP 200

Query: 545  RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724
             +  K     S   L   N+ SCHR L+TP+K+Y LGP++E+SNYVVK++A +ASDF+RV
Sbjct: 201  GRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFASYASDFMRV 260

Query: 725  TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904
            TFVEEDWSKL ++A+S  I++G+F++P RT IYHRILSILRDGI IG+K+FEFLAFSASQ
Sbjct: 261  TFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHRILSILRDGIVIGAKKFEFLAFSASQ 320

Query: 905  LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084
            LRS+SVWMFASN   K E+IREWMGCF  I S+SKCAARMGQLFSSS+QT +V  +D+  
Sbjct: 321  LRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQDMEI 380

Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189
            IPDIEVT+DGI YCFSDGIGKISL+ A+QVAQKCG
Sbjct: 381  IPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCG 415


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  502 bits (1292), Expect = e-140
 Identities = 249/394 (63%), Positives = 308/394 (78%)
 Frame = +2

Query: 8    ALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSFC 187
            ALL KLK+APK+YQR +GP +ASKFS+DRYH+C+E+ EFLW+RTTDFS +KSIG SSS C
Sbjct: 176  ALLLKLKHAPKLYQRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPC 235

Query: 188  WKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFFQ 367
            W++ +G + SD L+  P+   ++  L L E  + + +A E+VPL    SD  L YEI FQ
Sbjct: 236  WEIEDGLLSSDLLSGLPYCNNDVMDLVLDEVGDIY-SASELVPLASFPSDLKLPYEILFQ 294

Query: 368  LNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNLR 547
            LN+L+H+ KISL AV  DLI++L  L LDT  +ILQK+  ++STC+EP  F++++LH L 
Sbjct: 295  LNSLIHTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLG 354

Query: 548  KKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRVT 727
            K  K+ PS S S L  QN+ S HR LVTP+KVY LGP++ETSNY+VK++A HASDFLRVT
Sbjct: 355  KNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVT 414

Query: 728  FVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQL 907
            FVEEDW KL+ +A+S  +EQG+F++P+RT IYHRILSILRDG+ IGSKRF FLAFSASQL
Sbjct: 415  FVEEDWGKLSPNAISMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQL 474

Query: 908  RSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVSI 1087
            RS+SVWMFASN  VK EDIREWMGCF  IRSVSKCAARMGQLFS+S QT+ V    V  +
Sbjct: 475  RSNSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEIL 534

Query: 1088 PDIEVTTDGIPYCFSDGIGKISLTLAKQVAQKCG 1189
            PDIEVT+DG+ YCFSDGIGKIS   A QVAQKCG
Sbjct: 535  PDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCG 568


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score =  498 bits (1282), Expect = e-138
 Identities = 246/393 (62%), Positives = 308/393 (78%)
 Frame = +2

Query: 5    NALLFKLKYAPKIYQRFAGPTLASKFSADRYHICKENVEFLWIRTTDFSVLKSIGNSSSF 184
            NALL KL+Y P+IYQ+ AGP +A+KF  DRY  CKEN EF+W+RTTDFS LKSIG+S+SF
Sbjct: 176  NALLLKLRYGPRIYQKMAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSF 235

Query: 185  CWKLREGSIPSDTLASFPHYQEEINTLSLKEPLEKFGTAGEIVPLIKCQSDYHLDYEIFF 364
             W++ E S  SD   SFP Y+E +  LSL++  EKF +  E VPL+KC+ D  L YE  F
Sbjct: 236  FWEIVEESFDSDVFRSFPLYRENLKDLSLEDG-EKFCSPTETVPLVKCRLDSKLPYESLF 294

Query: 365  QLNALVHSQKISLAAVNDDLIKLLGSLSLDTTSVILQKLQAVESTCYEPSFFVQSQLHNL 544
            QLN+LVH+QKISLA+VND+LI LL SL  +T +VI QKL  + STCYEP  +V++QLH L
Sbjct: 295  QLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKMNSTCYEPLKYVRTQLHVL 354

Query: 545  RKKQKHLPSISQSMLKEQNLFSCHRTLVTPTKVYLLGPDVETSNYVVKHYAEHASDFLRV 724
              K+K +    Q  L + N+ SCHR L+TP+K+Y LGP++ETSN+VVKH+A +ASDF+R+
Sbjct: 355  SIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRI 414

Query: 725  TFVEEDWSKLTSDAVSTIIEQGLFSEPHRTPIYHRILSILRDGIEIGSKRFEFLAFSASQ 904
            TFVEEDWSKL ++A+S  +++G+FS P RT IY R+L+ILRDGI IGSKRFEFLAFSASQ
Sbjct: 415  TFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQ 474

Query: 905  LRSSSVWMFASNSTVKTEDIREWMGCFKAIRSVSKCAARMGQLFSSSQQTLVVPKRDVVS 1084
            LRS+SVW+FASN  VK  DIREWMG F  IRSVSKCAARMGQLFSSS+QT  +  +DV  
Sbjct: 475  LRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDL 534

Query: 1085 IPDIEVTTDGIPYCFSDGIGKISLTLAKQVAQK 1183
            IPDIE+T+DGI YCFSDGIGKIS + A+Q+A+K
Sbjct: 535  IPDIEITSDGIDYCFSDGIGKISQSFARQLAEK 567