BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023912
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large...    74   2e-11
gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]           73   3e-11
ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Ch...    73   3e-11
ref|XP_002525113.1| splicing factor u2af large subunit, putative...    72   4e-11
ref|XP_003605459.1| Splicing factor U2af large subunit B [Medica...    72   6e-11

>sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
           Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
           subunit A; AltName: Full=U2 small nuclear
           ribonucleoprotein auxiliary factor large subunit A;
           Short=U2 snRNP auxiliary factor large subunit A
           gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor,
           large subunit [Nicotiana plumbaginifolia]
          Length = 555

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -2

Query: 270 SDSAIPGTRRNMVSHPKNSFAFSDSSQEGILSRSTQVTRHAHRVYVGGLPAGADEQKIIS 91
           ++ AIPG   NM   P  S  F       + + + Q TRHA RVYVGGLP  A+EQ + +
Sbjct: 182 TNPAIPGLFSNMF--PLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVAT 239

Query: 90  FFGHVLVDIGAH-AGPALAVVGIHINREKNF 1
           FF HV+  IG + AGP  AVV ++IN EK F
Sbjct: 240 FFSHVMYAIGGNTAGPGDAVVNVYINHEKKF 270


>gb|ABU45194.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 557

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261 AIPGTRRNMVSHPKNSFAFSDSSQEGILSRSTQVTRHAHRVYVGGLPAGADEQKIISFFG 82
           +IPG   NM   P  S  F       I + + Q TRHA RVYVGGLP  A+EQ + +FF 
Sbjct: 190 SIPGMFSNMF--PLTSGQFGALPVMPIQAMTQQATRHARRVYVGGLPPSANEQSVATFFS 247

Query: 81  HVLVDIGAH-AGPALAVVGIHINREKNF 1
           HV+  IG + AGP  AVV ++IN EK F
Sbjct: 248 HVMYAIGGNTAGPGDAVVNVYINHEKKF 275


>ref|XP_001694654.1| U2 snRNP auxiliary factor, large subunit [Chlamydomonas
           reinhardtii] gi|158276466|gb|EDP02238.1| U2 snRNP
           auxiliary factor, large subunit [Chlamydomonas
           reinhardtii]
          Length = 306

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 37/58 (63%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = -2

Query: 171 STQVTRHAHRVYVGGLPAGADEQKIISFFGHVLVDIGAH-AGPALAVVGIHINREKNF 1
           S Q TRHA R+YVGGLP  A EQ I SFF H L  IG + AGP  AVV ++INREKNF
Sbjct: 5   SQQATRHARRIYVGGLPPTATEQSISSFFSHALAAIGGNTAGPGNAVVNVYINREKNF 62


>ref|XP_002525113.1| splicing factor u2af large subunit, putative [Ricinus communis]
           gi|223535572|gb|EEF37240.1| splicing factor u2af large
           subunit, putative [Ricinus communis]
          Length = 549

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
 Frame = -2

Query: 258 IPGTRRNMVSHPKNSFAFSDSSQEGIL------SRSTQVTRHAHRVYVGGLPAGADEQKI 97
           IPGT   +     N F      Q G L      + + Q TRHA RVYVGGLP  A+EQ +
Sbjct: 213 IPGTAPAIPGMFPNMFPLGTGQQFGTLPVMPVQAMTQQATRHARRVYVGGLPPTANEQSV 272

Query: 96  ISFFGHVLVDIGAH-AGPALAVVGIHINREKNF 1
            +FF HV+  IG + AGP  AVV ++IN EK F
Sbjct: 273 ATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKF 305


>ref|XP_003605459.1| Splicing factor U2af large subunit B [Medicago truncatula]
           gi|355506514|gb|AES87656.1| Splicing factor U2af large
           subunit B [Medicago truncatula]
          Length = 634

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
 Frame = -2

Query: 369 SSSYLAKEKSLVDCLA-LNQSSFVNVGPVANSKISDSAIPGTRRNMVSHPKNSFA-FSDS 196
           S ++++KE+S+   L  L +     +  + +  + + AI G   NM     N    FS  
Sbjct: 224 SVAFMSKEESMHRFLVGLVRLQLETISTLVDITVPNPAISGVLPNMFPMGANQMPQFSAL 283

Query: 195 SQEGILSRSTQVTRHAHRVYVGGLPAGADEQKIISFFGHVLVDIGAH-AGPALAVVGIHI 19
               I + + Q TRHA RVYVGGLP  A+EQ +  FF  V+ +IG + AGP  AVV ++I
Sbjct: 284 PMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYI 343

Query: 18  NREKNF 1
           N +K F
Sbjct: 344 NHDKKF 349