BLASTX nr result
ID: Coptis21_contig00023844
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00023844
(895 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi... 466 e-129
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 454 e-125
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi... 454 e-125
ref|XP_002867333.1| pentatricopeptide repeat-containing protein ... 439 e-121
ref|XP_002309359.1| predicted protein [Populus trichocarpa] gi|2... 437 e-120
>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 466 bits (1200), Expect = e-129
Identities = 228/298 (76%), Positives = 258/298 (86%), Gaps = 1/298 (0%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GYGLHG G EAL ++ +MLHS + PTGVTFLSVLYACSHAGLV EG++I++SM
Sbjct: 478 WNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMV 537
Query: 713 H-YGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
H +G + PE YACMVDLLGRAG L+KAL FI +MPV+PGP WGALLGACMIHK+ +LA
Sbjct: 538 HDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLA 597
Query: 536 QVASDQLFKLDTDNVGYHVLLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGET 357
++ASD+LF+LD NVGY+VLLSNIYSA QNYP AA VR V+++KL KTPGCTLIE+ T
Sbjct: 598 RLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANT 657
Query: 356 LYIFTSGDKSHPQSVAIYAELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKL 177
L+IFTSGD+SHPQ+ AIYA LEKLT KMREAGF+ ET A HDVEEEEKE MV VHSEKL
Sbjct: 658 LHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKL 717
Query: 176 AIAFGLINTKPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 3
AIAFGLI ++PGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC
Sbjct: 718 AIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 775
Score = 62.0 bits (149), Expect = 2e-07
Identities = 31/119 (26%), Positives = 60/119 (50%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GY +GL +A+ ++++M + P VT S+L AC+ G +S G+ ++ +
Sbjct: 377 WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLIN 436
Query: 713 HYGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
++ ++D+ + G + +A + + MP + W A++ +H H A
Sbjct: 437 RESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHGYGHEA 494
>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 454 bits (1168), Expect = e-125
Identities = 222/299 (74%), Positives = 257/299 (85%), Gaps = 2/299 (0%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GYGLHG G+EAL ++ +ML SG+ PTGVTFLS+LYACSH+GLVSEG +I+ SMA
Sbjct: 484 WNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA 543
Query: 713 H-YGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
+ YG Q E YACMVD+LGRAG+L AL+FI MP++PGPA WGALLGACMIHKN +A
Sbjct: 544 NNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMA 603
Query: 536 QVASDQLFKLDTDNVGYHVLLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGET 357
VAS +LF+LD +NVGY+VLLSNIYS D+N+P AA VRQ V+K+KL KTPGCTLIE+ +
Sbjct: 604 NVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQ 663
Query: 356 LYIFTSGDKSHPQSVAIYAELEKLTAKMREAGFKAET-EMAFHDVEEEEKEQMVNVHSEK 180
Y+FTSGD+SHPQ+ AI+ LEKLT KMREAG++AET A HDVE+EEKE MVNVHSEK
Sbjct: 664 QYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEK 723
Query: 179 LAIAFGLINTKPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 3
LAIAFGLI+TKPGTEIRIIKNLRVCLDCH ATKFISKITERVIVVRDANRFHHFK+GIC
Sbjct: 724 LAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 782
Score = 58.5 bits (140), Expect = 2e-06
Identities = 33/113 (29%), Positives = 59/113 (52%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GY +GL A+ ++++M+ L P VT S+L AC+ G +S G+ ++ +
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442
Query: 713 HYGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIH 555
+++ +VD+ + G + +A Q + M VD W A++ +H
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLH 494
>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like
[Cucumis sativus]
Length = 788
Score = 454 bits (1168), Expect = e-125
Identities = 222/299 (74%), Positives = 257/299 (85%), Gaps = 2/299 (0%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GYGLHG G+EAL ++ +ML SG+ PTGVTFLS+LYACSH+GLVSEG +I+ SMA
Sbjct: 484 WNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA 543
Query: 713 H-YGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
+ YG Q E YACMVD+LGRAG+L AL+FI MP++PGPA WGALLGACMIHKN +A
Sbjct: 544 NNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMA 603
Query: 536 QVASDQLFKLDTDNVGYHVLLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGET 357
VAS +LF+LD +NVGY+VLLSNIYS D+N+P AA VRQ V+K+KL KTPGCTLIE+ +
Sbjct: 604 NVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQ 663
Query: 356 LYIFTSGDKSHPQSVAIYAELEKLTAKMREAGFKAET-EMAFHDVEEEEKEQMVNVHSEK 180
Y+FTSGD+SHPQ+ AI+ LEKLT KMREAG++AET A HDVE+EEKE MVNVHSEK
Sbjct: 664 QYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEK 723
Query: 179 LAIAFGLINTKPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 3
LAIAFGLI+TKPGTEIRIIKNLRVCLDCH ATKFISKITERVIVVRDANRFHHFK+GIC
Sbjct: 724 LAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 782
Score = 58.5 bits (140), Expect = 2e-06
Identities = 33/113 (29%), Positives = 59/113 (52%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GY +GL A+ ++++M+ L P VT S+L AC+ G +S G+ ++ +
Sbjct: 384 WNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIK 442
Query: 713 HYGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIH 555
+++ +VD+ + G + +A Q + M VD W A++ +H
Sbjct: 443 SERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLH 494
>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297313169|gb|EFH43592.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 792
Score = 439 bits (1128), Expect = e-121
Identities = 211/298 (70%), Positives = 250/298 (83%), Gaps = 1/298 (0%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WN MI GYGLHG G+EAL I+ +ML+SG+ PT VTFL VLYACSHAGLV EG++I+ SM
Sbjct: 489 WNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548
Query: 713 H-YGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
H YG + + YAC+VD+LGRAG L++ALQFI MP+ PGP+ W LLGAC IHK+ +LA
Sbjct: 549 HRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLA 608
Query: 536 QVASDQLFKLDTDNVGYHVLLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGET 357
+ S++LF+LD DNVGYHVLLSNI+SAD+NYP AA VRQT +K+KL K PG TLIE+GET
Sbjct: 609 RTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGET 668
Query: 356 LYIFTSGDKSHPQSVAIYAELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKL 177
++FTSGD+SHPQ AI+ +LEKL KMREAG++ ETE+A HDVEEEE+E MV VHSE+L
Sbjct: 669 PHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERL 728
Query: 176 AIAFGLINTKPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 3
AIAFGLI T+PGTEIRIIKNLRVCLDCH ATK ISKITERVIVVRDANRFHHFKDG+C
Sbjct: 729 AIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVC 786
>ref|XP_002309359.1| predicted protein [Populus trichocarpa] gi|222855335|gb|EEE92882.1|
predicted protein [Populus trichocarpa]
Length = 605
Score = 437 bits (1125), Expect = e-120
Identities = 209/298 (70%), Positives = 251/298 (84%), Gaps = 1/298 (0%)
Frame = -3
Query: 893 WNAMICGYGLHGLGREALGIYEKMLHSGLVPTGVTFLSVLYACSHAGLVSEGEKIYQSMA 714
WNAMI GYGLHG G+EAL ++ ML S + PTG+TFLSVLYACSHAGLV EG+ I+ +M
Sbjct: 302 WNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMV 361
Query: 713 H-YGIQAGPEQYACMVDLLGRAGKLEKALQFINEMPVDPGPAEWGALLGACMIHKNKHLA 537
H +G + E YACMVD+LGRAG+L+KAL+FI MPV+PGP WGALLGACMIHK+ +LA
Sbjct: 362 HDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLA 421
Query: 536 QVASDQLFKLDTDNVGYHVLLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGET 357
VAS++LF+LD +N+GY+VL+SNIYS ++ YP AA VRQ +KK+L KTPGCTLIE+G+
Sbjct: 422 HVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQV 481
Query: 356 LYIFTSGDKSHPQSVAIYAELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKL 177
++FTSGD+SHPQS AIYAEL+KLT KM EAGF+ ET HD+EEEEKE + VHSEKL
Sbjct: 482 PHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKL 541
Query: 176 AIAFGLINTKPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 3
AIAFGLI+T+PG EIRIIKNLRVCLDCHN TKF+SKIT+RVIVVRDANRFHHFKDG+C
Sbjct: 542 AIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLC 599