BLASTX nr result

ID: Coptis21_contig00023809 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023809
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283592.2| PREDICTED: protochlorophyllide-dependent tra...    76   3e-12
emb|CBI16521.3| unnamed protein product [Vitis vinifera]               76   3e-12
ref|XP_002533392.1| pheophorbide A oxygenase, putative [Ricinus ...    68   7e-10
ref|XP_004170632.1| PREDICTED: protochlorophyllide-dependent tra...    67   2e-09
ref|XP_002283586.2| PREDICTED: LOW QUALITY PROTEIN: protochlorop...    65   6e-09

>ref|XP_002283592.2| PREDICTED: protochlorophyllide-dependent translocon component 52,
           chloroplastic-like [Vitis vinifera]
          Length = 532

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 32/45 (71%), Positives = 43/45 (95%)
 Frame = +2

Query: 2   RQSVMSMAAKTSVVSFAVLCFAASRWLSQFIYKIFYFHDFNHAVK 136
           +QS+MS+AA+T++VS AV+CFAASRWLS FIYKIF+FHD+NHA++
Sbjct: 488 KQSLMSVAARTALVSMAVICFAASRWLSHFIYKIFHFHDYNHALR 532


>emb|CBI16521.3| unnamed protein product [Vitis vinifera]
          Length = 401

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 32/45 (71%), Positives = 43/45 (95%)
 Frame = +2

Query: 2   RQSVMSMAAKTSVVSFAVLCFAASRWLSQFIYKIFYFHDFNHAVK 136
           +QS+MS+AA+T++VS AV+CFAASRWLS FIYKIF+FHD+NHA++
Sbjct: 357 KQSLMSVAARTALVSMAVICFAASRWLSHFIYKIFHFHDYNHALR 401


>ref|XP_002533392.1| pheophorbide A oxygenase, putative [Ricinus communis]
           gi|223526766|gb|EEF28992.1| pheophorbide A oxygenase,
           putative [Ricinus communis]
          Length = 552

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 28/45 (62%), Positives = 40/45 (88%)
 Frame = +2

Query: 2   RQSVMSMAAKTSVVSFAVLCFAASRWLSQFIYKIFYFHDFNHAVK 136
           +QSV+S AA+T++V+ AV CFAASRWL+ FIYK F++HD+NHA++
Sbjct: 508 KQSVLSAAARTTLVAVAVACFAASRWLAHFIYKSFHYHDYNHALR 552


>ref|XP_004170632.1| PREDICTED: protochlorophyllide-dependent translocon component 52,
           chloroplastic-like [Cucumis sativus]
          Length = 538

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 27/45 (60%), Positives = 39/45 (86%)
 Frame = +2

Query: 2   RQSVMSMAAKTSVVSFAVLCFAASRWLSQFIYKIFYFHDFNHAVK 136
           +QS++S AA+  +V+ A+LCFA+SRWLS FIYK F+FHD+NHA++
Sbjct: 494 KQSLVSGAARVLMVAMAILCFASSRWLSHFIYKSFHFHDYNHAIR 538


>ref|XP_002283586.2| PREDICTED: LOW QUALITY PROTEIN: protochlorophyllide-dependent
           translocon component 52, chloroplastic-like [Vitis
           vinifera]
          Length = 473

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +2

Query: 11  VMSMAAKTSVVSFAVLCFAASRWLSQFIYKIFYFHDFNHA 130
           VMS+AA+ + VS A+LCFAASRWLS FIYK F+FHD+ HA
Sbjct: 432 VMSVAARITAVSMAILCFAASRWLSYFIYKTFHFHDYTHA 471


Top