BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023690
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26264.3| unnamed protein product [Vitis vinifera]              241   3e-62
ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containi...   241   3e-62
ref|XP_002517126.1| pentatricopeptide repeat-containing protein,...   238   3e-61
ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containi...   228   5e-58
ref|NP_193221.3| pentatricopeptide repeat-containing protein [Ar...   221   5e-56

>emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  241 bits (616), Expect = 3e-62
 Identities = 113/157 (71%), Positives = 137/157 (87%)
 Frame = -2

Query: 474 SPLPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFC 295
           +PLP F+ NHLVNMYSK D  NSAQL+LSL+P+RSVVTWTALI+GSV NG FTSAL HF 
Sbjct: 38  NPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFS 97

Query: 294 SMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 115
           +M R+SIQPNDFTFPC FKAS SL+SP  GKQ+HALA+K GQISDVF+GCSAFDMY K G
Sbjct: 98  NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157

Query: 114 LRDDSRKLFDEMPDKNIATWNSFISNSVVDGRIYDAI 4
           L +++RK+FDEMP++NIATWN+++SNSV++GR  DA+
Sbjct: 158 LTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDAL 194



 Score =  109 bits (273), Expect = 2e-22
 Identities = 53/147 (36%), Positives = 79/147 (53%)
 Frame = -2

Query: 459 FLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRE 280
           F+     +MYSK  L   A+ +    P+R++ TW A +S SVL G +  AL  F    +E
Sbjct: 144 FVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKE 203

Query: 279 SIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDS 100
            I+P DF       A A L     GK +H LA+K   + ++F+G +  DMY K G  +D+
Sbjct: 204 GIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 263

Query: 99  RKLFDEMPDKNIATWNSFISNSVVDGR 19
            + FDEMP++N+ TWN+ I      G+
Sbjct: 264 ERAFDEMPERNLVTWNAMIGGYAHQGQ 290


>ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  241 bits (616), Expect = 3e-62
 Identities = 113/157 (71%), Positives = 137/157 (87%)
 Frame = -2

Query: 474 SPLPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFC 295
           +PLP F+ NHLVNMYSK D  NSAQL+LSL+P+RSVVTWTALI+GSV NG FTSAL HF 
Sbjct: 38  NPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFS 97

Query: 294 SMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 115
           +M R+SIQPNDFTFPC FKAS SL+SP  GKQ+HALA+K GQISDVF+GCSAFDMY K G
Sbjct: 98  NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAG 157

Query: 114 LRDDSRKLFDEMPDKNIATWNSFISNSVVDGRIYDAI 4
           L +++RK+FDEMP++NIATWN+++SNSV++GR  DA+
Sbjct: 158 LTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDAL 194



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 45/146 (30%), Positives = 75/146 (51%)
 Frame = -2

Query: 456 LSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRES 277
           ++N L++ Y K   +  ++++ S     + V+W ++I   V N     A   F    +E 
Sbjct: 246 VANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEG 305

Query: 276 IQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSR 97
           I+P DF       A A L     GK +H LA+K   + ++F+G +  DMY K G  +D+ 
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAE 365

Query: 96  KLFDEMPDKNIATWNSFISNSVVDGR 19
           + FDEMP++N+ TWN+ I      G+
Sbjct: 366 RAFDEMPERNLVTWNAMIGGYAHQGQ 391



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 44/143 (30%), Positives = 63/143 (44%)
 Frame = -2

Query: 459 FLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRE 280
           F+     +MYSK  L   A+ +    P+R++ TW A +S SVL G +  AL  F     E
Sbjct: 144 FVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHE 203

Query: 279 SIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDS 100
             +PN  TF     A A       G+QLH   ++ G  +DV +     D Y K      S
Sbjct: 204 GWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCS 263

Query: 99  RKLFDEMPDKNIATWNSFISNSV 31
             +F  +   N  +W S I + V
Sbjct: 264 EIIFSGISKPNDVSWCSMIVSYV 286


>ref|XP_002517126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543761|gb|EEF45289.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 463

 Score =  238 bits (608), Expect = 3e-61
 Identities = 111/156 (71%), Positives = 136/156 (87%)
 Frame = -2

Query: 474 SPLPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFC 295
           SPLP FLSNHL++MYSK DL NSAQLVL L+P RSVVTWT+LISGSV NGHF+ AL HF 
Sbjct: 38  SPLPPFLSNHLISMYSKLDLPNSAQLVLHLTPTRSVVTWTSLISGSVQNGHFSFALYHFF 97

Query: 294 SMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 115
           +M R++IQPNDFTFPC FKASASL  PF GKQ+HA+A+KFGQI+DVF+GCSAFDMY KTG
Sbjct: 98  NMRRDNIQPNDFTFPCAFKASASLLLPFVGKQIHAIAVKFGQINDVFVGCSAFDMYSKTG 157

Query: 114 LRDDSRKLFDEMPDKNIATWNSFISNSVVDGRIYDA 7
           L+ D++KLFDE+P++N+ TWN++ISN+V+ GR  +A
Sbjct: 158 LKQDAQKLFDELPERNVVTWNAYISNAVLYGRYQNA 193



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/149 (30%), Positives = 73/149 (48%)
 Frame = -2

Query: 450 NHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRESIQ 271
           N L++ Y K   +  A++V     +R+ V+W ++++    NG    A   F    +E I+
Sbjct: 248 NGLIDFYGKCKEVRLAEMVFGKMENRNAVSWCSMVAACEQNGEEEKACLFFVEGRKEGIE 307

Query: 270 PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 91
           P D+       A A L     G+  HALA+K     D+F+G +  DMY K G  +DS + 
Sbjct: 308 PTDYMVSSVISACAGLAGLELGRSFHALAVKACLEGDIFVGSALVDMYGKCGGIEDSEQA 367

Query: 90  FDEMPDKNIATWNSFISNSVVDGRIYDAI 4
           F EM ++N+ TWN+ I      G    A+
Sbjct: 368 FHEMSERNLVTWNALIGGYAHQGHAEMAV 396



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 44/140 (31%), Positives = 66/140 (47%)
 Frame = -2

Query: 459 FLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRE 280
           F+     +MYSK  L   AQ +    P+R+VVTW A IS +VL G + +A   F  + R 
Sbjct: 144 FVGCSAFDMYSKTGLKQDAQKLFDELPERNVVTWNAYISNAVLYGRYQNAAVAFVELRRA 203

Query: 279 SIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDS 100
             +P+  TF   F A A       G+QLH   I+ G    V +     D Y K      +
Sbjct: 204 GCEPDSTTFCVFFNACADQLYVDLGRQLHGFVIRSGFEKSVSVLNGLIDFYGKCKEVRLA 263

Query: 99  RKLFDEMPDKNIATWNSFIS 40
             +F +M ++N  +W S ++
Sbjct: 264 EMVFGKMENRNAVSWCSMVA 283


>ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  228 bits (580), Expect = 5e-58
 Identities = 111/157 (70%), Positives = 128/157 (81%)
 Frame = -2

Query: 474 SPLPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFC 295
           +PLP FL NHLVNMYSK DL NSAQLVLSL+  R+VVTWT+LISG V N  FTSAL HF 
Sbjct: 39  TPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFS 98

Query: 294 SMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 115
           +M RE + PNDFTFPC FKASASL  P TGKQLHALA+K G I DVF+GCSAFDMY KTG
Sbjct: 99  NMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTG 158

Query: 114 LRDDSRKLFDEMPDKNIATWNSFISNSVVDGRIYDAI 4
           LR ++R +FDEMP +N+ATWN+++SN+V DGR  DAI
Sbjct: 159 LRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAI 195



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
 Frame = -2

Query: 450 NHLVNMYSKFDLLNSAQLVLSL--SPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRES 277
           N L++ Y K   + S++LV S   S  R+VV+W +L++  V N     A   F    R+ 
Sbjct: 249 NGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQ-ARKE 307

Query: 276 IQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSR 97
           ++P DF       A A L     G+ +HALA+K     ++F+G +  D+Y K G  + + 
Sbjct: 308 VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAE 367

Query: 96  KLFDEMPDKNIATWNSFI 43
           ++F EMP++N+ TWN+ I
Sbjct: 368 QVFREMPERNLVTWNAMI 385



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
 Frame = -2

Query: 468 LPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSM 289
           L  F+     +MYSK  L   A+ +    P R++ TW A +S +V +G    A+A F   
Sbjct: 142 LDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKF 201

Query: 288 CRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLR 109
                +PN  TF     A A + S   G+QLH   ++     DV +     D Y K G  
Sbjct: 202 LCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDI 261

Query: 108 DDSRKLFDEMPD--KNIATWNSFIS 40
             S  +F  +    +N+ +W S ++
Sbjct: 262 VSSELVFSRIGSGRRNVVSWCSLLA 286


>ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1 gi|110735893|dbj|BAE99922.1| hypothetical protein
           [Arabidopsis thaliana] gi|332658109|gb|AEE83509.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 684

 Score =  221 bits (563), Expect = 5e-56
 Identities = 105/157 (66%), Positives = 128/157 (81%)
 Frame = -2

Query: 474 SPLPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFC 295
           SP P FL+N+L+NMYSK D   SA+LVL L+P R+VV+WT+LISG   NGHF++AL  F 
Sbjct: 38  SPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFF 97

Query: 294 SMCRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTG 115
            M RE + PNDFTFPC FKA ASL+ P TGKQ+HALA+K G+I DVF+GCSAFDMYCKT 
Sbjct: 98  EMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTR 157

Query: 114 LRDDSRKLFDEMPDKNIATWNSFISNSVVDGRIYDAI 4
           LRDD+RKLFDE+P++N+ TWN+FISNSV DGR  +AI
Sbjct: 158 LRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAI 194



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/145 (28%), Positives = 74/145 (51%)
 Frame = -2

Query: 450 NHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSMCRESIQ 271
           N L++ Y K   + S++++ +    ++ V+W +L++  V N     A   +    ++ ++
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 307

Query: 270 PNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLRDDSRKL 91
            +DF       A A +     G+ +HA A+K      +F+G +  DMY K G  +DS + 
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 367

Query: 90  FDEMPDKNIATWNSFISNSVVDGRI 16
           FDEMP+KN+ T NS I      G++
Sbjct: 368 FDEMPEKNLVTRNSLIGGYAHQGQV 392



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 44/143 (30%), Positives = 63/143 (44%)
 Frame = -2

Query: 468 LPCFLSNHLVNMYSKFDLLNSAQLVLSLSPDRSVVTWTALISGSVLNGHFTSALAHFCSM 289
           L  F+     +MY K  L + A+ +    P+R++ TW A IS SV +G    A+  F   
Sbjct: 141 LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 200

Query: 288 CRESIQPNDFTFPCTFKASASLKSPFTGKQLHALAIKFGQISDVFIGCSAFDMYCKTGLR 109
            R    PN  TF     A +       G QLH L ++ G  +DV +     D Y K    
Sbjct: 201 RRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQI 260

Query: 108 DDSRKLFDEMPDKNIATWNSFIS 40
             S  +F EM  KN  +W S ++
Sbjct: 261 RSSEIIFTEMGTKNAVSWCSLVA 283