BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023510
         (639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003537641.1| PREDICTED: parafibromin-like [Glycine max]         70   4e-10
ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativu...    68   1e-09
ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]...    63   5e-08
ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera]      62   1e-07
ref|NP_188898.1| RNA pol II accessory factor CDC73-like protein ...    59   8e-07

>ref|XP_003537641.1| PREDICTED: parafibromin-like [Glycine max]
          Length = 389

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 23/98 (23%)
 Frame = -3

Query: 226 DYVLKIKGIERPLRDPEALLECRDCDFHTALTTLTKKE-------------------RRL 104
           D++  I+  E+PL+D ++LLEC++ DF++ L + TK+E                   R +
Sbjct: 134 DFISMIRSAEKPLKDRQSLLECKNRDFYSVLVSATKREEERQRMESHQRKDGLVAKSRLM 193

Query: 103 GCQN*VNGF----GWYDMAPKPKMNFKGSKIGEGVPII 2
           G  +   GF    G YD  PKPKM+ KG+KIGEGVPII
Sbjct: 194 GSDDRGLGFSDDMGGYDPTPKPKMHLKGTKIGEGVPII 231


>ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativus]
           gi|449513423|ref|XP_004164322.1| PREDICTED:
           parafibromin-like [Cucumis sativus]
          Length = 407

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 23/98 (23%)
 Frame = -3

Query: 226 DYVLKIKGIERPLRDPEALLECRDCDFHTALTTLTKKE---RRLGCQN*VNGF------- 77
           DY+  I+ IERPL+D E+LLEC++ +F+  L   TK+E   +RL  Q   +G        
Sbjct: 150 DYMTMIRAIERPLKDRESLLECKNRNFYNVLVMSTKREEERQRLESQQRKDGLVAKSRLM 209

Query: 76  --------GW-----YDMAPKPKMNFKGSKIGEGVPII 2
                   G+     YD  PKPKM+ KG KIGEGVPII
Sbjct: 210 GSDDRGLVGYGDDLGYDANPKPKMHLKGGKIGEGVPII 247


>ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]
           gi|222864802|gb|EEF01933.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 405

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 23/103 (22%)
 Frame = -3

Query: 241 SQSVADYVLKIKGIERPLRDPEALLECRDCDFHTALTTLTKKE----------------- 113
           ++ V ++V  I   ERPL+D E+LLEC++ DF+  L   T++E                 
Sbjct: 143 NEGVENHVSLIYANERPLKDRESLLECKNRDFYGVLVASTRREEERHKFESQQRKDGLVA 202

Query: 112 --RRLGCQN*VNGFGW----YDMAPKPKMNFKGSKIGEGVPII 2
             R +G      G+G     YD A KPKM+ KG KIGEGVPII
Sbjct: 203 KSRLMGTDERGIGYGGDELGYDSAAKPKMHSKGGKIGEGVPII 245


>ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera]
          Length = 413

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 26/101 (25%)
 Frame = -3

Query: 226 DYVLKIKGIERPLRDPEALLECRDCDFHTALTTLTKKE-------------------RRL 104
           DY+  I+  ERPL+D E+LLEC+  DF++ L   T++E                   R +
Sbjct: 156 DYISMIRASERPLKDRESLLECKQRDFYSVLMASTRREEERHRLESHQRKDGLVAKSRLM 215

Query: 103 GCQN*VNGFGW-------YDMAPKPKMNFKGSKIGEGVPII 2
           G      GF W       YD  PKPKM    SKIGEGVPII
Sbjct: 216 GADERGLGF-WKDGDELGYDGTPKPKMLLNRSKIGEGVPII 255


>ref|NP_188898.1| RNA pol II accessory factor CDC73-like protein [Arabidopsis
           thaliana] gi|11994291|dbj|BAB01474.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|17529302|gb|AAL38878.1| unknown protein [Arabidopsis
           thaliana] gi|23296828|gb|AAN13180.1| unknown protein
           [Arabidopsis thaliana] gi|332643135|gb|AEE76656.1| RNA
           pol II accessory factor CDC73-like protein [Arabidopsis
           thaliana]
          Length = 415

 Score = 58.9 bits (141), Expect = 8e-07
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 27/102 (26%)
 Frame = -3

Query: 226 DYVLKIKGIERPLRDPEALLECRDCDFHTALTTLTKKE-------------------RRL 104
           DY++ I+  ERPL+  +A+L+C++ DF++ L   TK+E                   R +
Sbjct: 154 DYIMLIRSNERPLKSRDAILQCKNRDFYSVLVNSTKREEERQRIESHQRKDGLVAKSRLM 213

Query: 103 GCQN*-VNGFG-------WYDMAPKPKMNFKGSKIGEGVPII 2
           G +   + GF         YD  PK K++FK  KIGEGVPII
Sbjct: 214 GAEERGIVGFSSGGGDDNGYDANPKSKLHFKAGKIGEGVPII 255