BLASTX nr result
ID: Coptis21_contig00023502
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00023502 (1264 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI18867.3| unnamed protein product [Vitis vinifera] 222 1e-55 ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containi... 222 1e-55 ref|XP_002527312.1| pentatricopeptide repeat-containing protein,... 219 2e-54 ref|XP_002889073.1| pentatricopeptide repeat-containing protein ... 213 6e-53 gb|AAF16672.1|AC012394_21 hypothetical protein; 84465-87513 [Ara... 212 2e-52 >emb|CBI18867.3| unnamed protein product [Vitis vinifera] Length = 804 Score = 222 bits (566), Expect = 1e-55 Identities = 117/245 (47%), Positives = 162/245 (66%) Frame = -2 Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084 SLV+A E+ +A ++FK M +P D TYNIMIDCC I K A +SMM+RDGF P Sbjct: 561 SLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLP 620 Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904 TY +LIKI+L +E++ +A LL Q E I DV+++N IL+KA ++GR+ + EL+ Sbjct: 621 WTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVA 680 Query: 903 ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724 E+MH+ K+QPDP TCY ++ +YV G TALE+LQVLSMRMISE+ S L++ R ED Sbjct: 681 EQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELED- 739 Query: 723 FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544 F+ +ED +AE +I++ FK S + LA ALL LRWCA++G ISW+P+ Sbjct: 740 FIHSEDKDAESQILQFFKGS--------------DENLAIALLNLRWCAISGSPISWTPN 785 Query: 543 EGIWA 529 E +WA Sbjct: 786 ESLWA 790 >ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Vitis vinifera] Length = 728 Score = 222 bits (566), Expect = 1e-55 Identities = 117/245 (47%), Positives = 162/245 (66%) Frame = -2 Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084 SLV+A E+ +A ++FK M +P D TYNIMIDCC I K A +SMM+RDGF P Sbjct: 485 SLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLP 544 Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904 TY +LIKI+L +E++ +A LL Q E I DV+++N IL+KA ++GR+ + EL+ Sbjct: 545 WTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVA 604 Query: 903 ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724 E+MH+ K+QPDP TCY ++ +YV G TALE+LQVLSMRMISE+ S L++ R ED Sbjct: 605 EQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELED- 663 Query: 723 FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544 F+ +ED +AE +I++ FK S + LA ALL LRWCA++G ISW+P+ Sbjct: 664 FIHSEDKDAESQILQFFKGS--------------DENLAIALLNLRWCAISGSPISWTPN 709 Query: 543 EGIWA 529 E +WA Sbjct: 710 ESLWA 714 >ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533312|gb|EEF35064.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 802 Score = 219 bits (557), Expect = 2e-54 Identities = 119/264 (45%), Positives = 166/264 (62%) Frame = -2 Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084 SLV+A E+ +A Q+FK MK + TY +MID C +I K A +SMMLRDGF P Sbjct: 549 SLVEAGESYLALQMFKNMKSSGFRLNAATYTMMIDWCSSIQCYKTACALVSMMLRDGFYP 608 Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904 Q TY +LIK+++ N+ A LL Q SSEGIQPDV+++N I++KA +E R+ + ELIV Sbjct: 609 QTETYTALIKVLMEDGNFEAALNLLDQGSSEGIQPDVLLYNTIIRKAMLERRIDVIELIV 668 Query: 903 ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724 E+MH+ ++PD TC ++ YV G TA+EALQVLS+ MI EE+ LQ+ R E++ Sbjct: 669 EQMHRENIKPDSVTCNYVFSTYVECGFHNTAMEALQVLSLWMIEEEEDSLQQKRAELEED 728 Query: 723 FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544 F+ +ED EAE RI+ E F C + +A +LL LRWCA+ G ISWSP+ Sbjct: 729 FIYSEDQEAESRIL--------------EYFVGCRENIAVSLLNLRWCAILGYPISWSPN 774 Query: 543 EGIWAMSQKKQLETLAKNKKKEMK 472 E +WA ++L T +K+E+K Sbjct: 775 ETLWA----RRLSTNYCTRKEELK 794 >ref|XP_002889073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334914|gb|EFH65332.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 800 Score = 213 bits (543), Expect = 6e-53 Identities = 113/246 (45%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Frame = -2 Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084 SL++A+ET M +FK MK P D TYNIMIDCC I S K A +SMM+RDGF P Sbjct: 561 SLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSIIHSYKSACALVSMMIRDGFSP 620 Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904 + T+ +L+KI+L N+ +A LL Q + E I DV+ +N IL+KAF +G + + E IV Sbjct: 621 KAVTFTALMKILLNDGNFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIV 680 Query: 903 ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEE-QSVLQKNREYFED 727 E+MH+ KV PDP TC+ ++ YV G TA+EAL VLS+RM++EE + LQ+ + E+ Sbjct: 681 EQMHREKVNPDPTTCHYVFTCYVEKGYHATAIEALNVLSLRMLNEEDKESLQEKKIELEE 740 Query: 726 NFVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSP 547 NFV++ED EAE +I+++F++S ++LA ALL LRWCA+ G I WS Sbjct: 741 NFVMSEDPEAETKIIELFRNS--------------EEHLAAALLNLRWCAMLGARIIWSE 786 Query: 546 DEGIWA 529 D+ WA Sbjct: 787 DQSPWA 792 >gb|AAF16672.1|AC012394_21 hypothetical protein; 84465-87513 [Arabidopsis thaliana] Length = 558 Score = 212 bits (539), Expect = 2e-52 Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Frame = -2 Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084 SL++A+ET M +FK MK P D TYNIMIDCC I S K A +SMM+RDGF P Sbjct: 319 SLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSP 378 Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904 + T+ +L+KI+L N+ +A LL Q + E I DV+ +N IL+KAF +G + + E IV Sbjct: 379 KAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIV 438 Query: 903 ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEE-QSVLQKNREYFED 727 E+MH+ KV PDP TC+ ++ YV G TA+EAL VLS+RM++EE + LQ + E+ Sbjct: 439 EQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEE 498 Query: 726 NFVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSP 547 NFV++ED EAE +I+++F+ S ++LA ALL LRWCA+ G I WS Sbjct: 499 NFVMSEDPEAETKIIELFRKS--------------EEHLAAALLNLRWCAMLGGRIIWSE 544 Query: 546 DEGIWA 529 D+ WA Sbjct: 545 DQSPWA 550