BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023502
         (1264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18867.3| unnamed protein product [Vitis vinifera]              222   1e-55
ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containi...   222   1e-55
ref|XP_002527312.1| pentatricopeptide repeat-containing protein,...   219   2e-54
ref|XP_002889073.1| pentatricopeptide repeat-containing protein ...   213   6e-53
gb|AAF16672.1|AC012394_21 hypothetical protein; 84465-87513 [Ara...   212   2e-52

>emb|CBI18867.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  222 bits (566), Expect = 1e-55
 Identities = 117/245 (47%), Positives = 162/245 (66%)
 Frame = -2

Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084
            SLV+A E+ +A ++FK M    +P D  TYNIMIDCC  I   K A   +SMM+RDGF P
Sbjct: 561  SLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLP 620

Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904
               TY +LIKI+L +E++ +A  LL Q   E I  DV+++N IL+KA ++GR+ + EL+ 
Sbjct: 621  WTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVA 680

Query: 903  ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724
            E+MH+ K+QPDP TCY ++ +YV  G   TALE+LQVLSMRMISE+ S L++ R   ED 
Sbjct: 681  EQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELED- 739

Query: 723  FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544
            F+ +ED +AE +I++ FK S               + LA ALL LRWCA++G  ISW+P+
Sbjct: 740  FIHSEDKDAESQILQFFKGS--------------DENLAIALLNLRWCAISGSPISWTPN 785

Query: 543  EGIWA 529
            E +WA
Sbjct: 786  ESLWA 790


>ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like
            [Vitis vinifera]
          Length = 728

 Score =  222 bits (566), Expect = 1e-55
 Identities = 117/245 (47%), Positives = 162/245 (66%)
 Frame = -2

Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084
            SLV+A E+ +A ++FK M    +P D  TYNIMIDCC  I   K A   +SMM+RDGF P
Sbjct: 485  SLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLP 544

Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904
               TY +LIKI+L +E++ +A  LL Q   E I  DV+++N IL+KA ++GR+ + EL+ 
Sbjct: 545  WTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVA 604

Query: 903  ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724
            E+MH+ K+QPDP TCY ++ +YV  G   TALE+LQVLSMRMISE+ S L++ R   ED 
Sbjct: 605  EQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELED- 663

Query: 723  FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544
            F+ +ED +AE +I++ FK S               + LA ALL LRWCA++G  ISW+P+
Sbjct: 664  FIHSEDKDAESQILQFFKGS--------------DENLAIALLNLRWCAISGSPISWTPN 709

Query: 543  EGIWA 529
            E +WA
Sbjct: 710  ESLWA 714


>ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223533312|gb|EEF35064.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 802

 Score =  219 bits (557), Expect = 2e-54
 Identities = 119/264 (45%), Positives = 166/264 (62%)
 Frame = -2

Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084
            SLV+A E+ +A Q+FK MK      +  TY +MID C +I   K A   +SMMLRDGF P
Sbjct: 549  SLVEAGESYLALQMFKNMKSSGFRLNAATYTMMIDWCSSIQCYKTACALVSMMLRDGFYP 608

Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904
            Q  TY +LIK+++   N+  A  LL Q SSEGIQPDV+++N I++KA +E R+ + ELIV
Sbjct: 609  QTETYTALIKVLMEDGNFEAALNLLDQGSSEGIQPDVLLYNTIIRKAMLERRIDVIELIV 668

Query: 903  ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEEQSVLQKNREYFEDN 724
            E+MH+  ++PD  TC  ++  YV  G   TA+EALQVLS+ MI EE+  LQ+ R   E++
Sbjct: 669  EQMHRENIKPDSVTCNYVFSTYVECGFHNTAMEALQVLSLWMIEEEEDSLQQKRAELEED 728

Query: 723  FVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSPD 544
            F+ +ED EAE RI+              E F  C + +A +LL LRWCA+ G  ISWSP+
Sbjct: 729  FIYSEDQEAESRIL--------------EYFVGCRENIAVSLLNLRWCAILGYPISWSPN 774

Query: 543  EGIWAMSQKKQLETLAKNKKKEMK 472
            E +WA    ++L T    +K+E+K
Sbjct: 775  ETLWA----RRLSTNYCTRKEELK 794


>ref|XP_002889073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297334914|gb|EFH65332.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 800

 Score =  213 bits (543), Expect = 6e-53
 Identities = 113/246 (45%), Positives = 158/246 (64%), Gaps = 1/246 (0%)
 Frame = -2

Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084
            SL++A+ET M   +FK MK    P D  TYNIMIDCC  I S K A   +SMM+RDGF P
Sbjct: 561  SLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSIIHSYKSACALVSMMIRDGFSP 620

Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904
            +  T+ +L+KI+L   N+ +A  LL Q + E I  DV+ +N IL+KAF +G + + E IV
Sbjct: 621  KAVTFTALMKILLNDGNFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIV 680

Query: 903  ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEE-QSVLQKNREYFED 727
            E+MH+ KV PDP TC+ ++  YV  G   TA+EAL VLS+RM++EE +  LQ+ +   E+
Sbjct: 681  EQMHREKVNPDPTTCHYVFTCYVEKGYHATAIEALNVLSLRMLNEEDKESLQEKKIELEE 740

Query: 726  NFVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSP 547
            NFV++ED EAE +I+++F++S               ++LA ALL LRWCA+ G  I WS 
Sbjct: 741  NFVMSEDPEAETKIIELFRNS--------------EEHLAAALLNLRWCAMLGARIIWSE 786

Query: 546  DEGIWA 529
            D+  WA
Sbjct: 787  DQSPWA 792


>gb|AAF16672.1|AC012394_21 hypothetical protein; 84465-87513 [Arabidopsis thaliana]
          Length = 558

 Score =  212 bits (539), Expect = 2e-52
 Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%)
 Frame = -2

Query: 1263 SLVDADETRMAFQVFKYMKLHDIPPDGLTYNIMIDCCGAISSSKIASMFLSMMLRDGFPP 1084
            SL++A+ET M   +FK MK    P D  TYNIMIDCC  I S K A   +SMM+RDGF P
Sbjct: 319  SLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSP 378

Query: 1083 QKYTYKSLIKIMLGKENYRKAYWLLYQMSSEGIQPDVVVFNAILKKAFMEGRLRIAELIV 904
            +  T+ +L+KI+L   N+ +A  LL Q + E I  DV+ +N IL+KAF +G + + E IV
Sbjct: 379  KAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIV 438

Query: 903  ERMHKVKVQPDPETCYLLYHAYVRSGKDRTALEALQVLSMRMISEE-QSVLQKNREYFED 727
            E+MH+ KV PDP TC+ ++  YV  G   TA+EAL VLS+RM++EE +  LQ  +   E+
Sbjct: 439  EQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEE 498

Query: 726  NFVLAEDSEAELRIVKIFKDSFSTKHHKKEIFQDCGDYLATALLYLRWCALAGMSISWSP 547
            NFV++ED EAE +I+++F+ S               ++LA ALL LRWCA+ G  I WS 
Sbjct: 499  NFVMSEDPEAETKIIELFRKS--------------EEHLAAALLNLRWCAMLGGRIIWSE 544

Query: 546  DEGIWA 529
            D+  WA
Sbjct: 545  DQSPWA 550