BLASTX nr result
ID: Coptis21_contig00023476
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00023476
(209 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003619751.1| Pentatricopeptide repeat-containing protein ... 77 1e-12
ref|XP_003619749.1| Pentatricopeptide repeat-containing protein ... 77 1e-12
ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containi... 74 9e-12
ref|NP_001031033.1| pentatricopeptide repeat-containing protein ... 74 1e-11
ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
>ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 562
Score = 77.4 bits (189), Expect = 1e-12
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C + +LK AI LF M+ +I+PDV TFNILVDA EGR EA L +M+++GI P
Sbjct: 285 GFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKP 344
Query: 182 NVITYNSLI 208
+V+TYNSL+
Sbjct: 345 DVVTYNSLM 353
>ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 680
Score = 77.0 bits (188), Expect = 1e-12
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C + +LK AI LF M+ +I+PDV TFNILVDA EGR EA L +M+++GI P
Sbjct: 254 GFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKP 313
Query: 182 NVITYNSLI 208
+++TYNSL+
Sbjct: 314 DIVTYNSLM 322
Score = 66.6 bits (161), Expect = 2e-09
Identities = 29/69 (42%), Positives = 48/69 (69%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C I+ + A+ LF++M + I P+V+T+N L+D L GR S AL++++LM RG P
Sbjct: 359 GFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQP 418
Query: 182 NVITYNSLI 208
++ITY+S++
Sbjct: 419 DIITYSSIL 427
>ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 74.3 bits (181), Expect = 9e-12
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C + LK A SL +M ++I+PDV TFNIL+DALG EG+ EA+ + E M + + P
Sbjct: 277 GFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFP 336
Query: 182 NVITYNSLI 208
N++TY SLI
Sbjct: 337 NIVTYTSLI 345
>ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity
to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 73.9 bits (180), Expect = 1e-11
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C+ + L DM KR ISP+VVTF++L+D+ EG+ EA Q+L+ M+QRGI P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366
Query: 182 NVITYNSLI 208
N ITYNSLI
Sbjct: 367 NTITYNSLI 375
Score = 58.2 bits (139), Expect = 7e-07
Identities = 24/63 (38%), Positives = 44/63 (69%)
Frame = +2
Query: 20 QLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITPNVITYN 199
+L+ A L ++M +R I+P+ +T+N L+D E R EA+Q+++LM+ +G P+++T+N
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407
Query: 200 SLI 208
LI
Sbjct: 408 ILI 410
Score = 55.8 bits (133), Expect = 3e-06
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
GLC L A +LF +M + D++T+N L+ N GR + ++L M++R I+P
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331
Query: 182 NVITYNSLI 208
NV+T++ LI
Sbjct: 332 NVVTFSVLI 340
>ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 73.6 bits (179), Expect = 2e-11
Identities = 33/69 (47%), Positives = 50/69 (72%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
G C + + LF++M + + PD+VTF++L+D L EG+ +EA ++LE+M+QRGI P
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340
Query: 182 NVITYNSLI 208
N+ITYNSLI
Sbjct: 341 NLITYNSLI 349
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
GLC +L+ A LFE +S+ + PDVVT+NI++ G+ A + E M + G TP
Sbjct: 491 GLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTP 550
Query: 182 NVITYNSLI 208
++I YN+L+
Sbjct: 551 DIIAYNTLL 559
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = +2
Query: 2 GLCSIRQLKGAISLFEDMSKRSISPDVVTFNILVDALGNEGRTSEALQVLELMLQRGITP 181
GL I SL+ +M +SPD+ T +IL + L N R SEAL + +L+RG P
Sbjct: 100 GLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIP 159
Query: 182 NVITYNSLI 208
NV+TY +LI
Sbjct: 160 NVVTYTTLI 168