BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023388
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38481.3| unnamed protein product [Vitis vinifera]              145   3e-33
ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing prote...   117   7e-25
ref|XP_002438700.1| hypothetical protein SORBIDRAFT_10g024650 [S...   105   4e-21
ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|35...   104   7e-21

>emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  145 bits (367), Expect = 3e-33
 Identities = 68/115 (59%), Positives = 90/115 (78%)
 Frame = +3

Query: 39  FSTQVNTNFLGVDQKLKGLCYSGRIIQAVDILSHTESQLEAQTYALLLQECIFRKQLIVG 218
           F  Q   N   +D+ LKGLC+SGR+++AV +L  T  Q+E  TYALLLQECIF+K+   G
Sbjct: 51  FQVQPPRNSFHLDETLKGLCFSGRVMEAVGLLCRTGLQVEPATYALLLQECIFKKEFKTG 110

Query: 219 KRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMIS 383
           +RIHAQM  VG+ PD+YL+TKL+IL+AK GDLDT+HILFD + ++SL+SWNAMI+
Sbjct: 111 RRIHAQMIVVGYYPDEYLKTKLLILHAKTGDLDTSHILFDDLSKKSLISWNAMIA 165


>ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
           gi|449526397|ref|XP_004170200.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
          Length = 486

 Score =  123 bits (308), Expect = 2e-26
 Identities = 57/103 (55%), Positives = 81/103 (78%)
 Frame = +3

Query: 75  DQKLKGLCYSGRIIQAVDILSHTESQLEAQTYALLLQECIFRKQLIVGKRIHAQMFKVGF 254
           D+ L+GLC +G++ +AV +L     Q  ++TY LLLQECIFRK+ + GKRIHAQM  VG+
Sbjct: 60  DKTLRGLCLTGKLAEAVALLCCMALQFHSKTYCLLLQECIFRKEYMKGKRIHAQMVVVGY 119

Query: 255 RPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMIS 383
            P++YL TKL+ILYAK GDL+TA++L + + E+SLVSWN++I+
Sbjct: 120 VPNEYLNTKLLILYAKSGDLETAYVLHEHLLEKSLVSWNSLIA 162


>ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana] gi|223635634|sp|O23491.2|PP315_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g16470 gi|332658358|gb|AEE83758.1| pentatricopeptide
           (PPR) repeat-containing protein [Arabidopsis thaliana]
          Length = 501

 Score =  117 bits (294), Expect = 7e-25
 Identities = 62/124 (50%), Positives = 83/124 (66%)
 Frame = +3

Query: 12  LLWSRRCVHFSTQVNTNFLGVDQKLKGLCYSGRIIQAVDILSHTESQLEAQTYALLLQEC 191
           +L  +R   F  +       +D+ LKGLC +GR+ +AV +L  +  Q+E +TYA+LLQEC
Sbjct: 59  MLAEKRIGRFQVENQRKTEKLDKTLKGLCVTGRLKEAVGLLWSSGLQVEPETYAVLLQEC 118

Query: 192 IFRKQLIVGKRIHAQMFKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWN 371
             RK+   GKRIHAQMF VGF  ++YL+ KL+ILYA  GDL TA ILF ++  R L+ WN
Sbjct: 119 KQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWN 178

Query: 372 AMIS 383
           AMIS
Sbjct: 179 AMIS 182


>ref|XP_002438700.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
           gi|241916923|gb|EER90067.1| hypothetical protein
           SORBIDRAFT_10g024650 [Sorghum bicolor]
          Length = 431

 Score =  105 bits (262), Expect = 4e-21
 Identities = 53/105 (50%), Positives = 72/105 (68%)
 Frame = +3

Query: 69  GVDQKLKGLCYSGRIIQAVDILSHTESQLEAQTYALLLQECIFRKQLIVGKRIHAQMFKV 248
           G+ + LK LC +G + +AV +L  +     A TYALLLQEC+ R+ + +GKRIHA+M   
Sbjct: 5   GLARTLKSLCITGHLSKAVSLLCRSPVCPGAGTYALLLQECVNRRDVRLGKRIHARMVAT 64

Query: 249 GFRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMIS 383
           GFR   Y+ TKL+I Y K GDL  A  LFD +P+RS+V+WNA+IS
Sbjct: 65  GFRCSAYIATKLLIFYVKIGDLGCAQKLFDGMPQRSVVAWNAVIS 109


>ref|XP_003594259.1| Thymidine kinase [Medicago truncatula] gi|355483307|gb|AES64510.1|
           Thymidine kinase [Medicago truncatula]
          Length = 644

 Score =  104 bits (260), Expect = 7e-21
 Identities = 51/108 (47%), Positives = 74/108 (68%)
 Frame = +3

Query: 60  NFLGVDQKLKGLCYSGRIIQAVDILSHTESQLEAQTYALLLQECIFRKQLIVGKRIHAQM 239
           N   +D+ L+GLC SG++  A+ +L  T   +  +TY+L+LQECIF K    G+RIHA M
Sbjct: 138 NTQNLDKVLQGLCVSGKLEDAIRLLYRTGFPVHPRTYSLMLQECIFWKNYGRGRRIHAHM 197

Query: 240 FKVGFRPDQYLQTKLIILYAKDGDLDTAHILFDTIPERSLVSWNAMIS 383
             VG+ P++YL+ KL+ILYAK G L+TA  LF+ + E+   +WNAMI+
Sbjct: 198 IIVGYVPNEYLKIKLLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIA 245