BLASTX nr result

ID: Coptis21_contig00023317 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023317
         (757 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    65   2e-08
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    65   2e-08
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    65   2e-08
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    59   9e-07
emb|CBI24272.3| unnamed protein product [Vitis vinifera]               57   4e-06

>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = -2

Query: 297  CSWVWRNILKNRKEAKLIVRHQIGDGADTKFWLGPWHPMGILRDHFPMSLLYDSTCNLNA 118
            CSW W  ILK R  A   +++ IGDG  T  W   WHP   L D +    +YDS    NA
Sbjct: 1086 CSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNA 1145

Query: 117  PVANLLENGKWSCP------WH 70
             V  L++N +W  P      WH
Sbjct: 1146 KVNVLIQNSEWKTPTTQAIGWH 1167


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = -2

Query: 297 CSWVWRNILKNRKEAKLIVRHQIGDGADTKFWLGPWHPMGILRDHFPMSLLYDSTCNLNA 118
           CSW W  ILK R  A   +++ IGDG  T  W   WHP   L D +    +YDS    NA
Sbjct: 213 CSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNA 272

Query: 117 PVANLLENGKWSCP------WH 70
            V  L++N +W  P      WH
Sbjct: 273 KVNVLIQNSEWKTPTTQAIGWH 294


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = -2

Query: 297 CSWVWRNILKNRKEAKLIVRHQIGDGADTKFWLGPWHPMGILRDHFPMSLLYDSTCNLNA 118
           CSW W  ILK R  A   +++ IGDG  T  W   WHP   L D +    +YDS    NA
Sbjct: 31  CSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNA 90

Query: 117 PVANLLENGKWSCP------WH 70
            V  L++N +W  P      WH
Sbjct: 91  KVNVLIQNSEWKTPTTQAIGWH 112


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 59.3 bits (142), Expect = 9e-07
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = -2

Query: 297 CSWVWRNILKNRKEAKLIVRHQIGDGADTKFWLGPWHPMGILRDHFPMSLLYDSTCNLNA 118
           CS  W  ILK R  A   +++ IGDG  T  W   WHP   L D +    +YDS    NA
Sbjct: 746 CSSAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNA 805

Query: 117 PVANLLENGKWSCP------WH 70
            V  L++N +W  P      WH
Sbjct: 806 KVNVLIQNSEWKTPTTQAIGWH 827


>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = -1

Query: 757 REIIMRDCYRFHHFVEGVCSCGDYW 683
           R+IIMRD YRFHHFV+GVCSCGDYW
Sbjct: 705 RDIIMRDNYRFHHFVDGVCSCGDYW 729


Top