BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023293
         (1093 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   379   e-103
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...   364   2e-98
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...   363   3e-98
ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containi...   359   8e-97
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]   359   8e-97

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
            [Vitis vinifera]
          Length = 640

 Score =  379 bits (974), Expect = e-103
 Identities = 187/309 (60%), Positives = 225/309 (72%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            +D F  S MI  L  HG  E A   FS M S  IKPNDVTF+G+L ACSH+GLVD G  Y
Sbjct: 332  RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTY 391

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHG 730
            F  MS+ + + PK+EH+GCVVD+LGRAG ++EA ELIKSMP  P  IVW ALL ACRI+ 
Sbjct: 392  FTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYK 451

Query: 729  NVKLAEEVALRLIELEPQSCGNYVLLSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSI 550
            NV++AEE  + L+ELEP   GNYVLLSNIYS+A  WD+  N+RR MK   + K PG SSI
Sbjct: 452  NVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSI 511

Query: 549  AVNNVVNEFFAGDRAHSRSKEIYEKLDEIVTRLKTEGYAPRTSSALHDMDMDEKEQALLH 370
             V+N V+EF AGD++H  SK+I   L EI  RLK  GYAP T+S L D D  EKE AL H
Sbjct: 512  EVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAH 571

Query: 369  HSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRD 190
            HSEKLA+AFGL+ST   + IRIVKNLRVCDDCH+ +K+IS+ Y R++IVRD NRFHHF +
Sbjct: 572  HSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVN 631

Query: 189  GSCSCSDFW 163
            GSCSC D+W
Sbjct: 632  GSCSCKDYW 640


>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Vitis vinifera]
          Length = 738

 Score =  364 bits (934), Expect = 2e-98
 Identities = 170/303 (56%), Positives = 224/303 (73%)
 Frame = -2

Query: 1071 STMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKYFHMMSE 892
            + MI  L  HG A  A  +F  MR  G +P+D+TFVG+L ACSH GLV+ G + F  M E
Sbjct: 436  NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 891  EFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHGNVKLAE 712
            ++ + PK++H+GC++DLLGRAG  +EA  L+K+M M P   +WG+LL ACR+HGNV+L E
Sbjct: 496  DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGE 555

Query: 711  EVALRLIELEPQSCGNYVLLSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSIAVNNVV 532
              A  L ELEP++ G YVLLSNIY+ AGRWD+ A +R K+ +KG+ K PGCSSI V++VV
Sbjct: 556  FAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVV 615

Query: 531  NEFFAGDRAHSRSKEIYEKLDEIVTRLKTEGYAPRTSSALHDMDMDEKEQALLHHSEKLA 352
            +EF  GD+ H +S++IY+ LDEI   L+  G+ P TS  L+DMD + KE +L HHSEKLA
Sbjct: 616  HEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLA 675

Query: 351  VAFGLISTDHKTPIRIVKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRDGSCSCS 172
            +AFGLIST  +T IRIVKNLRVC +CH  +K+ISK +NR++I RD NRFHHF+DGSCSC 
Sbjct: 676  IAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCM 735

Query: 171  DFW 163
            D+W
Sbjct: 736  DYW 738



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            KD    + MI         +EA  +F  M+ + ++PNDVTFV +L AC+++G +D G   
Sbjct: 328  KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPI-VWGALLSACRIH 733
               + ++F  +     +  ++D+  + G+IE A ++     M P  +  W A++S   +H
Sbjct: 388  HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLGSWNAMISGLAMH 445

Query: 732  GNVKLAEEV 706
            G+  +A E+
Sbjct: 446  GHANMALEL 454


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Cucumis sativus] gi|449529868|ref|XP_004171920.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  363 bits (933), Expect = 3e-98
 Identities = 168/310 (54%), Positives = 230/310 (74%)
 Frame = -2

Query: 1092 VKDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVK 913
            +K     + MI  L  HG+A++AF +FS M S GI+PN++TFVG+L AC H GLVD G +
Sbjct: 425  IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQ 484

Query: 912  YFHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIH 733
            +F  M +++++ PK +H+GC++DLLGRAG  EEA  L+++M + P   +WG+LL ACR H
Sbjct: 485  FFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDH 544

Query: 732  GNVKLAEEVALRLIELEPQSCGNYVLLSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSS 553
            G V+L E VA RL ELEP + G YVLLSNIY+ AG+WD+ A +R ++ ++G+ K PGC++
Sbjct: 545  GRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTT 604

Query: 552  IAVNNVVNEFFAGDRAHSRSKEIYEKLDEIVTRLKTEGYAPRTSSALHDMDMDEKEQALL 373
            I V+NVV+EF  GD+ H +S++IY  L+E+  +LK  G+   TS  L+DMD + KE AL 
Sbjct: 605  IEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALS 664

Query: 372  HHSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFR 193
            HHSEKLA+AFGLIST   TPIRI+KNLRVC +CH   K+ISK +NR++I RD NRFHHF+
Sbjct: 665  HHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFK 724

Query: 192  DGSCSCSDFW 163
            DGSCSC+D+W
Sbjct: 725  DGSCSCNDYW 734


>ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820-like
            [Vitis vinifera]
          Length = 731

 Score =  359 bits (921), Expect = 8e-97
 Identities = 171/309 (55%), Positives = 224/309 (72%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            +D  + + +I     HG  EEA  IF+ M   G+KPND+TF+GLL ACSH GLV  G K 
Sbjct: 423  RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 482

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHG 730
            F  M   F L+P++EH+GC+VDLLGRAG ++EAHE+IKSMP+ P+ IVWGAL++ACR+H 
Sbjct: 483  FEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHK 542

Query: 729  NVKLAEEVALRLIELEPQSCGNYVLLSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSI 550
            N +L E  A +L+E+EP++CG  VL+SNIY+ A RW +AA +R+ MK  G+ K+PG S I
Sbjct: 543  NPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 602

Query: 549  AVNNVVNEFFAGDRAHSRSKEIYEKLDEIVTRLKTEGYAPRTSSALHDMDMDEKEQALLH 370
             VN  V+EF  GD++H + + I E L E+  +L   GY P TS+ L ++D +EKE AL +
Sbjct: 603  EVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTY 662

Query: 369  HSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRD 190
            HSEKLA+AFGLIST   TPIRIVKNLRVC+DCH   K++SK Y R +IVRD NRFHHFR+
Sbjct: 663  HSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFRE 722

Query: 189  GSCSCSDFW 163
            G CSC D+W
Sbjct: 723  GYCSCGDYW 731



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 5/171 (2%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            +D  + + M+         ++AF +F  MR++G++P  VT V LL  C+  G +D G K+
Sbjct: 322  RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KW 380

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHEL-IKSMPMDPHPIVWGALLSACRIH 733
             H   ++ R+         +VD+  + G I  A  L I+++  D    +W A+++   +H
Sbjct: 381  VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD--ICMWNAIITGFAMH 438

Query: 732  GNVKLAEEVALRLIELEPQSCG----NYVLLSNIYSKAGRWDEAANLRRKM 592
            G     EE      E+E Q        ++ L +  S AG   E   L  KM
Sbjct: 439  G---YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM 486


>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  359 bits (921), Expect = 8e-97
 Identities = 171/309 (55%), Positives = 224/309 (72%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            +D  + + +I     HG  EEA  IF+ M   G+KPND+TF+GLL ACSH GLV  G K 
Sbjct: 463  RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 522

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHELIKSMPMDPHPIVWGALLSACRIHG 730
            F  M   F L+P++EH+GC+VDLLGRAG ++EAHE+IKSMP+ P+ IVWGAL++ACR+H 
Sbjct: 523  FEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHK 582

Query: 729  NVKLAEEVALRLIELEPQSCGNYVLLSNIYSKAGRWDEAANLRRKMKEKGVVKKPGCSSI 550
            N +L E  A +L+E+EP++CG  VL+SNIY+ A RW +AA +R+ MK  G+ K+PG S I
Sbjct: 583  NPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 642

Query: 549  AVNNVVNEFFAGDRAHSRSKEIYEKLDEIVTRLKTEGYAPRTSSALHDMDMDEKEQALLH 370
             VN  V+EF  GD++H + + I E L E+  +L   GY P TS+ L ++D +EKE AL +
Sbjct: 643  EVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTY 702

Query: 369  HSEKLAVAFGLISTDHKTPIRIVKNLRVCDDCHLFLKMISKYYNRQMIVRDCNRFHHFRD 190
            HSEKLA+AFGLIST   TPIRIVKNLRVC+DCH   K++SK Y R +IVRD NRFHHFR+
Sbjct: 703  HSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFRE 762

Query: 189  GSCSCSDFW 163
            G CSC D+W
Sbjct: 763  GYCSCGDYW 771



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 5/171 (2%)
 Frame = -2

Query: 1089 KDTFLCSTMIEVLGTHGKAEEAFTIFSYMRSTGIKPNDVTFVGLLKACSHVGLVDAGVKY 910
            +D  + + M+         ++AF +F  MR++G++P  VT V LL  C+  G +D G K+
Sbjct: 362  RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KW 420

Query: 909  FHMMSEEFRLMPKVEHFGCVVDLLGRAGHIEEAHEL-IKSMPMDPHPIVWGALLSACRIH 733
             H   ++ R+         +VD+  + G I  A  L I+++  D    +W A+++   +H
Sbjct: 421  VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD--ICMWNAIITGFAMH 478

Query: 732  GNVKLAEEVALRLIELEPQSCG----NYVLLSNIYSKAGRWDEAANLRRKM 592
            G     EE      E+E Q        ++ L +  S AG   E   L  KM
Sbjct: 479  G---YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM 526