BLASTX nr result
ID: Coptis21_contig00023268
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00023268 (251 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-... 69 7e-13 emb|CBI31781.3| unnamed protein product [Vitis vinifera] 69 8e-13 ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-... 68 2e-12 ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-... 70 5e-12 ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-... 70 5e-12 >ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera] Length = 1137 Score = 68.6 bits (166), Expect(2) = 7e-13 Identities = 35/43 (81%), Positives = 40/43 (93%) Frame = -2 Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50 V SFV ASSAKL VLDGI+TRMG+SD+I+QGRSTFL+ELSEAS Sbjct: 846 VGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEAS 888 Score = 29.6 bits (65), Expect(2) = 7e-13 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -1 Query: 77 FLR*IE*GLDILHNSTSRSLVIIDE 3 FL + I+HN TSRSLVIIDE Sbjct: 880 FLEELSEASHIIHNCTSRSLVIIDE 904 >emb|CBI31781.3| unnamed protein product [Vitis vinifera] Length = 903 Score = 68.6 bits (166), Expect(2) = 8e-13 Identities = 35/43 (81%), Positives = 40/43 (93%) Frame = -2 Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50 V SFV ASSAKL VLDGI+TRMG+SD+I+QGRSTFL+ELSEAS Sbjct: 706 VGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEAS 748 Score = 29.6 bits (65), Expect(2) = 8e-13 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -1 Query: 77 FLR*IE*GLDILHNSTSRSLVIIDE 3 FL + I+HN TSRSLVIIDE Sbjct: 740 FLEELSEASHIIHNCTSRSLVIIDE 764 >ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-like [Brachypodium distachyon] Length = 968 Score = 68.2 bits (165), Expect(2) = 2e-12 Identities = 33/43 (76%), Positives = 39/43 (90%) Frame = -2 Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50 V SFV ASSA+LHV+DGIYTRMGASD+I+QG STF +EL+EAS Sbjct: 712 VGSFVPASSARLHVVDGIYTRMGASDSIQQGTSTFYEELNEAS 754 Score = 28.9 bits (63), Expect(2) = 2e-12 Identities = 13/16 (81%), Positives = 15/16 (93%) Frame = -1 Query: 50 DILHNSTSRSLVIIDE 3 +ILHN +SRSLVIIDE Sbjct: 755 NILHNCSSRSLVIIDE 770 >ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus] Length = 1094 Score = 70.1 bits (170), Expect(2) = 5e-12 Identities = 34/43 (79%), Positives = 39/43 (90%) Frame = -2 Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50 V SFV A SAKLHVLDGIYTRMGASD+I+QGRSTFL+E++E S Sbjct: 846 VGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETS 888 Score = 25.4 bits (54), Expect(2) = 5e-12 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -1 Query: 47 ILHNSTSRSLVIIDE 3 IL +S+SRSLVIIDE Sbjct: 890 ILRHSSSRSLVIIDE 904 >ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus] Length = 966 Score = 70.1 bits (170), Expect(2) = 5e-12 Identities = 34/43 (79%), Positives = 39/43 (90%) Frame = -2 Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50 V SFV A SAKLHVLDGIYTRMGASD+I+QGRSTFL+E++E S Sbjct: 863 VGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETS 905 Score = 25.4 bits (54), Expect(2) = 5e-12 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -1 Query: 47 ILHNSTSRSLVIIDE 3 IL +S+SRSLVIIDE Sbjct: 907 ILRHSSSRSLVIIDE 921