BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023268
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...    69   7e-13
emb|CBI31781.3| unnamed protein product [Vitis vinifera]               69   8e-13
ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-...    68   2e-12
ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-...    70   5e-12
ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-...    70   5e-12

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score = 68.6 bits (166), Expect(2) = 7e-13
 Identities = 35/43 (81%), Positives = 40/43 (93%)
 Frame = -2

Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50
           V SFV ASSAKL VLDGI+TRMG+SD+I+QGRSTFL+ELSEAS
Sbjct: 846 VGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEAS 888



 Score = 29.6 bits (65), Expect(2) = 7e-13
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 77  FLR*IE*GLDILHNSTSRSLVIIDE 3
           FL  +     I+HN TSRSLVIIDE
Sbjct: 880 FLEELSEASHIIHNCTSRSLVIIDE 904


>emb|CBI31781.3| unnamed protein product [Vitis vinifera]
          Length = 903

 Score = 68.6 bits (166), Expect(2) = 8e-13
 Identities = 35/43 (81%), Positives = 40/43 (93%)
 Frame = -2

Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50
           V SFV ASSAKL VLDGI+TRMG+SD+I+QGRSTFL+ELSEAS
Sbjct: 706 VGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEAS 748



 Score = 29.6 bits (65), Expect(2) = 8e-13
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 77  FLR*IE*GLDILHNSTSRSLVIIDE 3
           FL  +     I+HN TSRSLVIIDE
Sbjct: 740 FLEELSEASHIIHNCTSRSLVIIDE 764


>ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-like [Brachypodium
           distachyon]
          Length = 968

 Score = 68.2 bits (165), Expect(2) = 2e-12
 Identities = 33/43 (76%), Positives = 39/43 (90%)
 Frame = -2

Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50
           V SFV ASSA+LHV+DGIYTRMGASD+I+QG STF +EL+EAS
Sbjct: 712 VGSFVPASSARLHVVDGIYTRMGASDSIQQGTSTFYEELNEAS 754



 Score = 28.9 bits (63), Expect(2) = 2e-12
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -1

Query: 50  DILHNSTSRSLVIIDE 3
           +ILHN +SRSLVIIDE
Sbjct: 755 NILHNCSSRSLVIIDE 770


>ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 1094

 Score = 70.1 bits (170), Expect(2) = 5e-12
 Identities = 34/43 (79%), Positives = 39/43 (90%)
 Frame = -2

Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50
           V SFV A SAKLHVLDGIYTRMGASD+I+QGRSTFL+E++E S
Sbjct: 846 VGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETS 888



 Score = 25.4 bits (54), Expect(2) = 5e-12
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 47  ILHNSTSRSLVIIDE 3
           IL +S+SRSLVIIDE
Sbjct: 890 ILRHSSSRSLVIIDE 904


>ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 966

 Score = 70.1 bits (170), Expect(2) = 5e-12
 Identities = 34/43 (79%), Positives = 39/43 (90%)
 Frame = -2

Query: 178 VASFVTASSAKLHVLDGIYTRMGASDNIKQGRSTFLDELSEAS 50
           V SFV A SAKLHVLDGIYTRMGASD+I+QGRSTFL+E++E S
Sbjct: 863 VGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETS 905



 Score = 25.4 bits (54), Expect(2) = 5e-12
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 47  ILHNSTSRSLVIIDE 3
           IL +S+SRSLVIIDE
Sbjct: 907 ILRHSSSRSLVIIDE 921